FastQCFastQC Report
Wed 11 May 2022
EGAF00003619312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155888822
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC4460897628.615891394701798No Hit
ACCCTCCT4249561227.26020471179133No Hit
TGGAATTA3335782021.39846819805977No Hit
CAATGGAG2928465018.78559964998645No Hit
CAAGGGAG24257911.5561032336237681No Hit
CACTGGAG17231061.1053428834044303No Hit
CCATGGAG5824660.37364192796325063No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)