FastQCFastQC Report
Wed 11 May 2022
EGAF00003619314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156807412
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC4480228528.571535253703438No Hit
ACCCTCCT4280156527.295626178691094No Hit
TGGAATTA3372855921.50954382181883No Hit
CAATGGAG2994278519.095261262267375No Hit
CAAGGGAG22407671.4289930376505415No Hit
CACTGGAG16164211.0308320119459657No Hit
CCATGGAG4719300.3009615387313452No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)