FastQCFastQC Report
Wed 11 May 2022
EGAF00003619315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152044552
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA4005454626.343953448591833No Hit
AGTTCGGC3841318525.26442710028834No Hit
TCCGGAAG3755572224.700472003758478No Hit
GTAATCTT3465535722.792896255829014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)