FastQCFastQC Report
Wed 11 May 2022
EGAF00003619320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153809506
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGAT5482771835.646508090338706No Hit
ATGCCTTA3635995023.63959871244889No Hit
TAATGACC3269303821.255538002963224No Hit
CGTATCGG2860463518.597442865462423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)