FastQCFastQC Report
Wed 11 May 2022
EGAF00003619322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96961505
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC3253123033.550665287218884No Hit
ACGCGGGT2424678625.00661061315003No Hit
TTTACATG2016976120.80182336278712No Hit
GAATTCCA1930194419.90681147121221Illumina Small RNA Adapter 2 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)