FastQCFastQC Report
Wed 11 May 2022
EGAF00003619326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138081481
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATGC4065544929.443085854503543No Hit
CAGCCACT3915100028.353548728232425No Hit
TGATTCTA2831403220.505307297507912No Hit
ACTAGGAG2335016616.910425518973106No Hit
ACTCGGAG50627503.6664945677979803No Hit
ACGAGGAG4035590.29226149450120686No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)