FastQCFastQC Report
Wed 11 May 2022
EGAF00003619327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139324023
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGTAT3863630127.73125565000373No Hit
GGTTCCTC3800332027.276932708151847ABI Solid3 Adapter A (100% over 8bp)
ATCATGCA3271741123.48296459972305No Hit
TAACAAGG2883050420.693132009258733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)