FastQCFastQC Report
Wed 11 May 2022
EGAF00003619328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139418464
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATGC4093947229.36445491179705No Hit
CAGCCACT3972200828.491210461191134No Hit
TGATTCTA2867896320.570419567956222No Hit
ACTAGGAG2388858717.1344499965227No Hit
ACTCGGAG48671113.49100890969506No Hit
ACGAGGAG3531400.25329500115565756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)