FastQCFastQC Report
Wed 11 May 2022
EGAF00003619330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138168407
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGTAT3822481127.6653772233185No Hit
GGTTCCTC3764431327.245239210147364ABI Solid3 Adapter A (100% over 8bp)
ATCATGCA3244228523.480248274122463No Hit
TAACAAGG2853882820.655103883480397No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)