FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003619544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGCTTCAACACGCGCGTGCTGCGCGTCGAGCCCGTGAGCGATGCTC44.878048780487805No Hit
GACTGAAATGCCTGGAAGTGTCCCTTTATTTATAAAATAACTTTTGTCAT22.4390243902439024No Hit
CCCACATACAGGTTTGCCTGGAAAAGCCAAATGGATCCAAAGAAAACATT22.4390243902439024No Hit
CATCACCTCTCATCTGGAGCTCTGCATGGGCCTCCTCTCAGCTCTTCAGA22.4390243902439024No Hit
CCCCATCTCTACTGAAAATACAAAAAATTAGCCAGGCATGGTGGCTCATG22.4390243902439024No Hit
GTGCTCGCCACCATGCCTGGCTAATTTTTTTTCTATTTTAATAAATTTAA22.4390243902439024No Hit
ATTCCATTCCATTCGATGATTCCATTCGAGTCCATTCGATGATTCTATTC22.4390243902439024No Hit
GAAAAGACTGGGACTTCTTGCTGGATTTGCATTCCTTACAGGAGTTGGCC11.2195121951219512No Hit
GCGGATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGA11.2195121951219512No Hit
CCCTGGGCGTTTCAAGGACGAGAAAATTAGGCATGGAGGCATTTCAGAAT11.2195121951219512No Hit
ATCATCGAATGGAATCCAATGGAATCATCGAATGGAATCGAAGGGAATCA11.2195121951219512No Hit
GTCCAAAAACTTAGCATGGAATATATGGCTCTTCAAATATTGAAGCCTTT11.2195121951219512No Hit
GTCCTCAGCATCTCCCTTTGCCGTTCACTACGATTTCCCAATGTAAGTCG11.2195121951219512No Hit
GGGCAAAACTTGCATAGACCTTCTTCAGGTGCTGCTGCGTTGACGGGGTT11.2195121951219512No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGAGT11.2195121951219512No Hit
GAGTTTAATCTGTTTATGTTCAATGTTATTGTTGATAGTTTAGGACGTAC11.2195121951219512No Hit
GGTGATGTCCAGGTGTCTTAAGTATAGTTTTAAGAGAAATTTGCTCTCAG11.2195121951219512No Hit
GTGGTGTCTTATTGGGGTTTTGATGTACATTTCCCTTCAGACTAATGATC11.2195121951219512No Hit
TCTACAACTAAGAATGTCAAGCTTCAAAGAATTATAATTAATTTCTAAGA11.2195121951219512No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA11.2195121951219512Clontech Universal Primer Mix Long (96% over 26bp)
TAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACGAGCTA11.2195121951219512No Hit
CTCTAGTTTTTCCTTCTCCTTCAGCAGGTTGGCAATCTCGGTCTGCAAAG11.2195121951219512No Hit
GAAGTAGACAAAAATGAATGGCTTTTGTCATTTGGAATCTGAGCACATAT11.2195121951219512No Hit
GTAGCATCTCCTGCATCCGCCGCAGCTCCTCATCTTTCTCTCGGATAAGC11.2195121951219512No Hit
ATAGACGGGTGTGATCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCG11.2195121951219512No Hit
TTACTAGCCCTATTTAATCAGATTTGCAGCACAGCATTCAAAATTTTTCA11.2195121951219512No Hit
TCTGATATCAGCTTGACCATATCTTAAGTTACTGGGTTTTTTTGTTTGTT11.2195121951219512No Hit
TGTCACACCAAGTGTGATAGCGCCTCCAGCAGTTTCTTCACAGCTTCAGA11.2195121951219512No Hit
CATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCA11.2195121951219512No Hit
CAGTGAGCCAAGATTGTGCCATTGCACTCTAACTTAGTGACAGAGCAAGA11.2195121951219512No Hit
GACAGTCTGGCCACATTCTCCGGCACCGCCTCATGGGAACACCGCTTCCC11.2195121951219512No Hit
GGATAGAGAATGACTTTGACAAGTTGACAGAAGTAGGTTTCAGAAGGTCG11.2195121951219512No Hit
TTTCTTGGCTCCTGCAGGACATCTGGACATATGTGTGCAGGTCACAGGGG11.2195121951219512No Hit
GTGGTGTCTTATTGGGGTTTTGATGTACATTTCCCTTCTGACTAATGATC11.2195121951219512No Hit
CTTCATTTCTTCTCTTTCTTCTTATCCTTTTCATTCATGGCCAGGATCAT11.2195121951219512No Hit
GTCCTCGGTTTTGCCATCGCCGTCCGCGTCCGGTGCCGGATCGCCGTCGA11.2195121951219512No Hit
CAATGAGGATTCCATTCGGTTCCATTTGATGATGATTCCTTTGAATTCCA11.2195121951219512No Hit
ATTCAGGACATATGCATGTGCAAAGACTTCATGTCTAAAACACCAAAAGC11.2195121951219512No Hit
GTTACTAGCTTTCCTGTCTCCGGCTTCCCTTCAATATCATTCTGTGACAA11.2195121951219512No Hit
ATATGAATGTGTAAGGATGATTGTCTGCTTCTTTTGTTGAGCAAGCATGC11.2195121951219512No Hit
GGGTGACAGACTGAGACTCTGTCTCAAAAAAAAAAAAAAAATGTAAGTGT11.2195121951219512No Hit
ATGGTGTGCACAGTGCCTTCAATTAATGCACTTGAGCATACGTAATTACA11.2195121951219512No Hit
CTATGGCTGCTGTTGCTCTACACAGCAGAGTAGAGTAGTTGCTGTAGAGA11.2195121951219512No Hit
TCTTGAGGTTGTATCATGACATATCTCAATTTTGTTTATTCATTCAACAA11.2195121951219512No Hit
ATCCCATGTCTACTAAAAATACAGAAAATTAGCAAGGCATGGTGGCACAC11.2195121951219512No Hit
CTATGAAGATTCCATTCATTTCCATCTGATGATGATTCAATTCGATTCAA11.2195121951219512No Hit
ATCTATACTTTTAAATCCATTCTCAAATAGCCAAATATTTATTTTATTTA11.2195121951219512No Hit
CTTATACACATCTCCGAGCCCACGAGACTCCTTGTGCCAGATCTCGTATG11.2195121951219512No Hit
GTTTAGGCTCATGGGAGTAAAACTGGAAAAGGAAGCCTTAATCAGAGTTC11.2195121951219512No Hit
GATGTGAAGAGAAAAGGAAAGAGCGAAATATCAATGGTGATGATTAACTT11.2195121951219512No Hit
GGTCTCAACGCCGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT11.2195121951219512Clontech Universal Primer Mix Long (96% over 26bp)
TCCTTGTAAGAATCATGAGACCGAGAGTGGTTCCCATTTTAAAGTTGAGA11.2195121951219512No Hit
TTATGACCTTATTACATATCATAGATCTTCACTCTTGCTTTAGATTCTAA11.2195121951219512No Hit
CAAGAAGCTCATTTGTCTAGTAAAATAGAGAAGAGTACGGAGCAATGAAC11.2195121951219512No Hit
ATGTATGGCATATCCTGTACACCAATTGAAGGTCAGAGCTTTGGTATTTT11.2195121951219512No Hit
CTACAGGCACGTACCACCACACTCGGTTAATTTTTTTGTAGTTTTAGTAG11.2195121951219512No Hit
GATCGACCGGCTTGTCGAGGAAGTCACCCACCGCGGCACCAAGCGGACGG11.2195121951219512No Hit
GTATAAAGTCTAGTACTAAAGTAAACAGCAGACTTTGAGGGGCACGAGAA11.2195121951219512No Hit
GTATCAGGAACTTAAACAAATTTACCAAAAAAAAAAACCCAACCCCCATT11.2195121951219512No Hit
TGTTTGCATTCAACTCATAGAGTTGAACACTTCCCTTCATACAGCAGGTT11.2195121951219512No Hit
CCACTCACTGTAGATGGCTTTACAGACCCATCAAATTCAGAGAGGTTCTG11.2195121951219512No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA11.2195121951219512No Hit
AGGCGCCACCGTCTGCCTGCACCACGATGACCGACAAGGAGTGGGCGACA11.2195121951219512No Hit
GAATAAAGTCCCACGTTTGAAGCTCCTTTTTCTCCAACATTCTACTTTGG11.2195121951219512No Hit
GATAAGTACTTGGCACACCGCTGGTGTTTAATAAATACTTAAGTGAATGA11.2195121951219512No Hit
TTTCTACTCATCAGATTCCCTACATACTGCTTACAATTATTTTCCATGTA11.2195121951219512No Hit
CCCTGGGCGTTTCAAGGAAGAGAAAATTAGGCATGGAGGCATTTCAGAAT11.2195121951219512No Hit
ATCCTTGTGTTCTTCCCATTTCCCGTGGCAGAACCTATTATCATCTTGAC11.2195121951219512No Hit
GTGCACCACCAGGTGGCATTGCCGGTTGACGTTCGCCAGCGAGGTGGAAA11.2195121951219512No Hit
ACCTTCTATAGTGGATTACAAAGGTTTCATAATGGGAGGTGATTCAGAAC11.2195121951219512No Hit
AAACAATGCAAAAGATCAGCAAAATGAATACTTGATTTTTTAAAAAGATT11.2195121951219512No Hit
ATCAAAACTTTTCAATCCATTCTCAAATAGACAAAAATTTATTTTATTTA11.2195121951219512No Hit
GTGCCCATGAAAGCAGTGGGAAGGATGCTGGGGTTGACAGCAATACAAAA11.2195121951219512No Hit

[OK]Adapter Content

Adapter graph