FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003619545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTACGCTCCTCGCGTAATGCACCGCATCGACCGCGATGTCGCAGCCC44.878048780487805No Hit
GAAAAGACTGGGACTTCTTGCTGGATTTGCATTCCTTACAGGAGTTGGCC22.4390243902439024No Hit
CTATTCTGCACAATGTTCACTATTTGGGTGATGTGGGTGATAATTACACT22.4390243902439024No Hit
ACTCCAGCCTGGGTAACAAGAGCAAAACTCCGTCTTAAAAAAAAAAAAAA22.4390243902439024No Hit
CAGTTGCTTCAGGCCATCTGGGTGTATACGTGCAGGGCACAGGGGATATG22.4390243902439024No Hit
ACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGCTGGTGGGT22.4390243902439024No Hit
GAATAGAATCGAATGGAACAATCATCGAATGGACTCAAATGGAATTATCC22.4390243902439024No Hit
GTGTTGATGAAATATAATGATTTATATAATTTGGGTAAATACTATTCATT22.4390243902439024No Hit
TGGGAGGGGAGCCTGGAAGACAACAGTTGGGAAGGGGAGTGGGTGCCGCA22.4390243902439024No Hit
AGCAATCCTTCCACCTCAGCCTCCCCAGTAGCTGGGACTACAGGCATGCA22.4390243902439024No Hit
ATTGTATAAAAGTATATGAGATTGAGTCCCATATACTTTTACCATGGAGA11.2195121951219512No Hit
CACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAA11.2195121951219512No Hit
GGTCTGGGCCGCCTTCATCCTGACCCGTCCGCTTGGTGCCGCGGTGGGTG11.2195121951219512No Hit
TAACAATAGAATCCTATAGATAGGAAGGGAAAGGTTGATATTTGAACTAC11.2195121951219512No Hit
ATGCACGACATTGTCGCCCACTCCTTGTCGGTCATCGTGGTGCAGGCAGA11.2195121951219512No Hit
ACTGACTACATTCCTGGATTATCTTACAGGCCTGCTTTCACCTTTTCCCT11.2195121951219512No Hit
CCTCAAAGGTATCAAAATATCCACTTGCAGATTCTACAAAAAGAGTGCTT11.2195121951219512No Hit
GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCATCTC11.2195121951219512No Hit
CAGCTGGTTCTCCTGCCTCAGCCTACTGAGTAGCCAGGATTACAGGTGTG11.2195121951219512No Hit
GATCTGGCTGCTGTGCGAGTCGGGCTCGGGCACCCGAGAAGTCACCGACC11.2195121951219512No Hit
TGCCTGCACCCTGCAGACACGCACAGCACACACAAAATCAGCTAGAAAAT11.2195121951219512No Hit
CAATAAATCCTTTGCTTTTGCTTGTGCTGTGTGCCCATATTGCCTACTGC11.2195121951219512No Hit
GTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT11.2195121951219512No Hit
AGTTAGCTGATAGACGGCTTCAAAACCCTGATTAACAGACTGAGCCAGAA11.2195121951219512No Hit
CTCCGCCTCCAGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAGC11.2195121951219512No Hit
GAGTTTGGAAGAAAAGTACACTGTCACAAAAAAAAAAAAAAGGCATAATT11.2195121951219512No Hit
ATTCTAAGCATAGGCGGAGGTGCAGGTGAAATTGATCTTCAAATTCTCTC11.2195121951219512No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.2195121951219512Clontech Universal Primer Mix Long (96% over 26bp)
ATTTTTGTTTGTTTTCTTTAAGGTGCTGATCAGAAACCCACAAATATCTG11.2195121951219512No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.2195121951219512No Hit
GCCCAGGGATGGGGGACCCCTGGGTTATAAGGCAGTACTTGCAAGCCTCC11.2195121951219512No Hit
GGTATCTCAGTGTGGTTTTGATTTGCATTTTTCTAATGATCAGTTATGTT11.2195121951219512No Hit
CCACCACGCCCAGCCGATTTTTGTATTTTAGTAGAGATGGGGTTTCGCTG11.2195121951219512No Hit
GGGGGGGTGTGTGTGTGTGTGTGTGTGGGTGTGGGTGTGTGTGGGGGGGG11.2195121951219512No Hit
CGAATGGAATCACCGAATAGAATCGAATGGAACAATCATCGAATGGACTC11.2195121951219512No Hit
CATCAAGATACCTCCCAGAAAGAGGTAGCTACGGCGCCTGGCATAGAGTG11.2195121951219512No Hit
ACTGTAAGCAGTAGATGACACAATCAGATTACCTTTATGTGATTTCAAGC11.2195121951219512No Hit
CTGCTCCCCTGTGTACACCCTTTCTCTGTAATTGCAGTGTATGTTTTTTG11.2195121951219512No Hit
GTGCACTTAAGTCTCAAGTACTTTTTAAGTCCTTAGTTTTAAAATATTTT11.2195121951219512No Hit
ATTTAACCCTGGAATAATAGAGGGGTGGGGAAGTCCCTGGTGAGATCTAT11.2195121951219512No Hit
TTTGTGGCGGCTGCAGGGGCCTATGTCCATATGGTCACTCATTTCATTCA11.2195121951219512No Hit
AAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA11.2195121951219512Clontech Universal Primer Mix Long (96% over 26bp)
CAATAACCCCTTTGCTTTCTGCAGCCACTTCTTCTGGGACATGATGCTAC11.2195121951219512No Hit
CAGAGGTTGCAGTGAGCAGAGATCACACGACTGCACTCCAGACCGGGCGA11.2195121951219512No Hit
TCTTAATAGGGCACTTGATTTTCTAGGTGTGGACACAACAGTTGATAGAC11.2195121951219512No Hit
CTTTGATTCCATTCAAAGGTGATTTCATTCAAGTCCATCCGATAATTGCA11.2195121951219512No Hit
TCACCAAGCCGCGCATCCTCGAAGCCGTCCGCGAAGGCGCCGGCGAACGG11.2195121951219512No Hit
GTAGTGATCCTATGGATTTCTGTGCTATTGGTTGTAATGTCTCGTTTTTG11.2195121951219512No Hit
GCACTATTCTTATTTGGAACCAACCCAAATGTCCATCGATGATAGACTGG11.2195121951219512No Hit
CTCTCCTTCATTGAACTTTCCCTCCCTCACTGATGCTGCAGCCTTTCCAG11.2195121951219512No Hit
AGTGGAAGCTGGTCAAACAGCACCTCTCTCCCCTGCCCCATGACCAACGA11.2195121951219512No Hit
CATCAACAAAGTGCCCCTTCCTGTTGACAAGTTGGCACCTTTACCTCTGG11.2195121951219512No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA11.2195121951219512Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAATTCCAATCCTAGGCATATTCCCAATGGAAAGGTGTGCATGTGATCAC11.2195121951219512No Hit
GTTTTAGTTTTATGGCATGTTTTGCACCCATATTAAATCTAGTTTTTGTC11.2195121951219512No Hit
CCTTACAGGAGTTGGCCTGGGCCCTGCCCTGGAGTTTTGTATTGCTGTCA11.2195121951219512No Hit
CTAATGTAGGGTGGAAGTTGAAACGTGAAAGTTGCCTGTCCTGAGCACGT11.2195121951219512No Hit
GCGGCAAGGTGGTGTATTCGCCGGTGAAGGGATTACCCTGTCCGCCAAGG11.2195121951219512No Hit
GAGCACATCCGGTGTTAGAAGCGCTGGTAGGCCTTGGAGAGGCGGGTTAG11.2195121951219512No Hit
TGAGAGACATCGCCCTTACCCCTCCAAAAAAAACTCCCCAGAAGGAATTT11.2195121951219512No Hit
AAATATACACACTTAAAAATCACAGCAATCACATTCTTCTTTGAAAACGT11.2195121951219512No Hit
CAGCTATTGAAGCTTATGCACACATCACAAAGTTCTCGTGCCATGGTTTT11.2195121951219512No Hit
TTTTCAAATATATGATGTGATAAATGGAATGCATTAATATTTTATGAATT11.2195121951219512No Hit
CTCTTATCCACTGTGACTTTTCTTTTAAACTGGGATCTGTGATTCCAGAG11.2195121951219512No Hit
CTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAA11.2195121951219512No Hit
GCATTCGATGATGAGTCCATCCATTTCAATTTCATGGTAATTCCATTCGT11.2195121951219512No Hit
GAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGGG11.2195121951219512No Hit
GCAACAAACTGACTCGGGAAAGTGGTACCGACTTCCCCATCCCTGCTGTC11.2195121951219512No Hit
AGGTGGAGGAATAGGAAAAGGAGAATGAGTAATAGGAAGAGAAGAAAAGG11.2195121951219512No Hit
ATACTGAAGCTTTAGCTTCCTTCTTTTTGTCAGATCTTAAAAAATGCTAT11.2195121951219512No Hit

[OK]Adapter Content

Adapter graph