FastQCFastQC Report
Tue 19 Sep 2023
EGAF00003619664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55597647
Sequences flagged as poor quality0
Sequence length35-80
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1160860.20879660608658493No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT623160.11208388009658035No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT621180.11172774991718623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)