FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003619900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCCGTGACGGGCGAGACCATGAACATCTTTGCCGCCGCCGTGACGGGC33.614457831325301No Hit
GGCGAAGACGAACCCCCTCGGCGCCGCGTCACGCCACTGGCGGAAGCTGG22.4096385542168677No Hit
AACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGC22.4096385542168677No Hit
TCTCCAGGGAGGAGCTGGAAGCCGCCATGGCCATCTCCTGCTCGAAGGCC22.4096385542168677No Hit
CACGGGCAGTGAGCGGGAACTTGGTGATGCCACAGGTATTGCTCCCTCGG22.4096385542168677No Hit
CGTATACCCAGCTGGTAACTGAGTGGCTCGGTCAACGTGAGTACCAGGAA22.4096385542168677No Hit
ATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAA22.4096385542168677No Hit
CTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCTTCACC22.4096385542168677No Hit
GGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT22.4096385542168677No Hit
GAACAGGCCGGGCGTGATGACCTGCCCGATGGCCAGCTTGCGGCCGATGC22.4096385542168677No Hit
GGCTTGCGCGCAAGGCATGATGCGACAAGGTCAGTGTAAGTCCCGACGTC11.2048192771084338No Hit
CATCCCGGTGTGCCGCAGCATCGGACAGACCGGCTGCCTCGTCACCTACA11.2048192771084338No Hit
GCTGGGCATCGGCGGCTTCACGGCGCCCCGCGCGCTGAGCACCCGCAACG11.2048192771084338No Hit
ATGTATCTCATGAAAGGAAGGCTCTGAATCTTGTAGTGTAGAAAACCACA11.2048192771084338No Hit
GTCCACGGTCTTCATGTTGGAGAAGTGCAGTTCCTTGAGCTTGACCGGCG11.2048192771084338No Hit
TCCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGG11.2048192771084338No Hit
GTACCGGCATCGCCCGTTACCGCAACATCTCCGTCAAGCCCACCGAGGCT11.2048192771084338No Hit
CGCCCAGCTCGTGGCCCTGCTCGGCGACGGGCTGTGGCTGCGCTCGGCCC11.2048192771084338No Hit
CTTCCTCGACGATGTTGGGGGCGAATTGCCTTGCTGAGGGTGGTTTGATG11.2048192771084338No Hit
TTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCGCG11.2048192771084338No Hit
ACCTGGGGTCGCGGTTACTTGGGCTGGCCGGCGAACCCTTGAGTGGCCTG11.2048192771084338No Hit
GTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGG11.2048192771084338No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG11.2048192771084338Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCCCTGGTGTCCGTGAGCTTCCTGGTCCTGTCCTGCTTCCCCTCACTGTT11.2048192771084338No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA11.2048192771084338No Hit
GTCGCGCGCAGCGCCGCCTCGTCGCGCCGCAGTTCCTCTTCCTTACGGAA11.2048192771084338No Hit
CCTCAACGCCCCATCACCGAAACAACGTCCCTGGACATCACAGCTAGCCG11.2048192771084338No Hit
GTTGTGGGACACCCCTGCTAGCCCGCCGCAAGAGTTTTACTCGTGGATTG11.2048192771084338No Hit
ATAGATGAGCAGCCCACCCATTTTCTGATTAGCCCTCTGGCTTTCTGCTG11.2048192771084338No Hit
CTACTTTACGGGGCGCTTCGACAGCATCTTCCAAATCGACAATCACCGCA11.2048192771084338No Hit
GAGGCGGCGATGACCTTCGCCGACGCCGAACGCTATCGGCAAAGCTACGC11.2048192771084338No Hit
TGCTGACGTCATGGTCGGGCCACCACTGCCTGAACTCCGGACTGGCGATC11.2048192771084338No Hit
CCGGATGTACACCCACTACTCGTGTTGGCACCTCTGGCTCAGCCCCGAGA11.2048192771084338No Hit
TCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTCCTCCGCCGCCGCGG11.2048192771084338No Hit
CATCAAGGACGCACCAGCCTTGCAACGGGTTTGCAGCGGGGGTGCAAATG11.2048192771084338No Hit
GATTGCCATGTTCGGAAAAACGCGCGTCTTGTGCGCATAATGAAAGTTCG11.2048192771084338No Hit
ACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTA11.2048192771084338No Hit
GGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTT11.2048192771084338No Hit
TGGTAATGCTATTGATGGAAAGGGTCCAATTGGTTCCAAGACGCGTAGGC11.2048192771084338No Hit
ATCCTTACTTTAGCATCGAAATAATGTCCAAGAGTAAACTTTACCCAATT11.2048192771084338No Hit
CCATAGCTTGTTGCAGAAGTTCCTATACCCTTCGCAACGCTTTAAATCGA11.2048192771084338No Hit
CCCTGGGGCGGCCAGTTCTCCAGGCGGCCGCCGAGCGTCAGCCCGCGCGA11.2048192771084338No Hit
GCTACGACATCGTGCTCGTGGCCCGCGACGAGCTGAGGCTGGCCGAGATG11.2048192771084338No Hit
AAAGGAAGTTTTGTGAATGGGGTGTTTGAGGTACATAAGAAAAATGTAAG11.2048192771084338No Hit
CCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGC11.2048192771084338No Hit
GTATCAACGCAGAGTACATGGGACACAGCAGTCCGTGCCGCCGTCCCGCC11.2048192771084338No Hit
GTCTAGACATGGGACCCTGGGTGAACGCCTTACCTCTCTGAGCATTGGGT11.2048192771084338No Hit
GCCAACATTTATTCTTTTTAGTAGGACACTTCACCCCCTTTGTTGAAAAA11.2048192771084338No Hit
ATTCACAATTGAGGATTTCCACAACACGGTGAGCCCTGGTGCCTGTCTTG11.2048192771084338No Hit
TTCGGCGACTCCGCGAGGCGGCGCTCGGCGTCGGGGTCGACGAACAGGCG11.2048192771084338No Hit
ACACTGTGAAGAACCAAGGAAAATACTGGGGTCTGTTTGTTTTAGAAAAT11.2048192771084338No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT11.2048192771084338No Hit
GGCGCGGCGGCAAGAGGAGGGCGGACGCCGCCGGGTCTGCGCTTAGGGGG11.2048192771084338No Hit
ATTTCCAGCGGCATCACCGGCAACTACTGGTCTTTCGGCAAGGACGGCAA11.2048192771084338No Hit
CCACCAGCCTGGGCGCAGTGGTGCTGGGGGCGTGCAGCTGGGCCCAGGGG11.2048192771084338No Hit
TTGGAGTCGAGTAGAACAGAATTGAATGGAATGGCATCAAATGGAATGGA11.2048192771084338No Hit
TCCGGGGCCTCAGGCAGGTGCGCCCGGTGCATCGCGACCTCATGCACGTC11.2048192771084338No Hit
GTTAACTACCGATTTGCTAAATTCTAGGGTTCCACACAAGGTTCATTCGC11.2048192771084338No Hit
GAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGC11.2048192771084338No Hit
GGATACCGGAGATGATCTGGATACGCACCGGCGTGCGCCGCTTATCGCTG11.2048192771084338No Hit
CTTTGAAGTCAAGACAAAGCTGGGCTCGACCTTCAAGGGTCCTCGTTTTG11.2048192771084338No Hit
GGAGTGCTAACAGGAATGAATGAAACTTCTGCTGTAATCATTGCTGCACC11.2048192771084338No Hit
CTTTATTCTCGTGAGAGGGGAGGACAGCAGAGGGAGTCAGGGGAGGGAGA11.2048192771084338No Hit
GTCAGATCGGCGTCGATGTTCGTCAACCAAATTCCAAGCCAGGCCTCGTC11.2048192771084338No Hit
GGGAACAGCAGCTTCTGGTCATCGGGAACGTCGGGGCCGGCGAACATCTC11.2048192771084338No Hit
ATTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTACGGACGAAACCCCGA11.2048192771084338No Hit
GAGAGTGAGGATGAGGAGAGCTATGACACAGAGTCAGAGTTCACGGAGTT11.2048192771084338No Hit
CTATCAATCTGTCAATCCGGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGT11.2048192771084338No Hit
GAGGCACAGTGTCTCAGGGATGGGTGGGCCTCGGCTGGGACTAAGCAAGT11.2048192771084338No Hit
GTACTGGCCTGGGTGTCACAGGTCGAACCGGAGAAACATGCCTACTGAGC11.2048192771084338No Hit
GTATTTAACTTTTCTTTCTCTGCTTGTCAAATGAGAGTTAGATTTTATTT11.2048192771084338No Hit
TACATGTAGCCATTGAGTTCAATGGCTACATGTATGATTGGAACAGCAGA11.2048192771084338No Hit

[OK]Adapter Content

Adapter graph