FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003619997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length140
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGACGGTCTGACCAAGGCCAAGGCAGAGCAGGCACTGAACGTGACGCTG24.3478260869565215No Hit
CGATTATCTGGCCGAACGCCTGTCGATTCCGGTCGTCACCGGCTTTCCGT24.3478260869565215No Hit
GTCCCAAGCAACCGATCCGCACCAATTGCACTACCGCCTACGCCACCTGC24.3478260869565215No Hit
ATCGTGCGCCGCCCGCATGACAGCGGCATGTCAGCCGCGCCTGCGTCCTC24.3478260869565215No Hit
GCCATCTTCGGGCGAAACTCACGGCAGAGCACCGCGAGCTTGTCGGCCTG24.3478260869565215No Hit
ACCCAGGATCAGGCACAGCAGCGCCGGCAGTATGGGCGGGAAAGATAGGC12.1739130434782608No Hit
GTCGAGCCAAGCGCCAGCAGACGCCAATGTCGCCATAGTTGTCGACGACG12.1739130434782608No Hit
CATCTTCTCGTTCCGCGACGAGTTCGGCCAGTGGGATCCGAAGGCCCAGC12.1739130434782608No Hit
GACGATCGCACATGCCTGCTATGGCCACAACTCCTTCTTCAAGGGCAATT12.1739130434782608No Hit
CTACAGCATCAGCGAGGCCAGCAAATCGCCTGAAGCCTCTCCGTCCACCA12.1739130434782608No Hit
CCTCTTGTTTGGGAGAAACAGCTGGCCTTGGATAACTTTGGAGAAGAGCA12.1739130434782608No Hit
GCTGGATACCTTGAACGCGACGCTTGTGGGCGATCCGTTCTGGACGGAAG12.1739130434782608No Hit
GTACTTGGACGGATCATCGATGCCCGCCGTGTTCGGTAGCGGGATCGCAA12.1739130434782608No Hit
TTGACCCGCTGTTCCAGTTGTTGCAACCGTTCGCGCATGCGCGTCAGGCC12.1739130434782608No Hit
TCGCAAAGCCCGGCTCGACTCCGGAAGATGCAAGCCAAGGTTCGACAAGA12.1739130434782608No Hit
GCCAGCAGGTCGCGCAGCACAGGGCTGGCGGTGCGCGTGGGCATCGACTG12.1739130434782608No Hit
GCAGATCCGAAACCCGAAACCAATCGAAGGACGTGATACATGCGCCCGAG12.1739130434782608No Hit
ACGTGGACGCGCGGGTTCGCGGTGGCGTGAAGTCGCTTGAGCTGCGCCGC12.1739130434782608No Hit
CGCTGCACGTTCACGCACCCACGCGGAAGAATACTGGGCGCTCAAGAATG12.1739130434782608No Hit
CGGTTCGGCAACCTCCGGGGCAGGCGTCGTTACGGGGGGCGCCATCAGGC12.1739130434782608No Hit
CCACAACCCTGGGCGAAAGAACTCGTAAGTACGCTGCTCGTCGCTGCCGA12.1739130434782608No Hit
CCTTTTACCCGGTAGTTCTCGACACCCCAGTCGATGATTTCACCCATCCC12.1739130434782608No Hit
GCATAGTCCTGCCAGATGAAATTTGCAGGCGGCGCGTCGGCGGGGAACGG12.1739130434782608No Hit
TAGCGGACGTCGCCCATGGCGCGCACCAGCTCGCAGTAGATCTTGGTGAT12.1739130434782608No Hit
GAGTTGGCGTGCGAGAAGTCGATCATGACCTGCTCGCGCAGGCCCGAGGC12.1739130434782608No Hit
CTTCAGCAGCAGCGAGGCCAGCAAATCGCCGGAAGCCTCGCCGGCCACCA12.1739130434782608No Hit
CCCGTCGGGTGCCTTGTTCTGTCTTGGACTGCCTTGCTGATGCCGAGCTG12.1739130434782608No Hit
GTGCCCGCGCGTGATCTCTCCGCGCTGGCGTGGGTCGCGCCCATCATGCG12.1739130434782608No Hit
CTGATGAGGTAGCACAGCCCCCGCGCGAGGAACATGCCGCCCAGCGTGAC12.1739130434782608No Hit
CTTCCAACCTGGGCCGCCGGCGCTGCCTGGCGGGGGTGCCCCTGCTGGCA12.1739130434782608No Hit
GGGGACGTGCGCGAGCCATTGAGGAAAGCCGGGAAATTCAGCCCCGGGAT12.1739130434782608No Hit
ACGGATATGCGCGCGCCACCGGCAACGTCGGCGTCGCCCTGGTGACCTCC12.1739130434782608No Hit
TTCAATGGCCGCTTGGATGATCGCCTTCTTGCGCGCCTGCGCGGCAAGCT12.1739130434782608No Hit
AGGTCGCTCAGCATCCGCGCCAACTCGCCGGTCATCAGCGCGACATCGGA12.1739130434782608No Hit
GCCAAACCCGACGCAGAAAAACCCTGACCCCTGCCCCGACGATGAATTCC12.1739130434782608No Hit
TGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACC12.1739130434782608No Hit
CAAGAATATAAAGCCCAGGCTGAGCCTTCTCATCGGCAGCCGAAGCCGCC12.1739130434782608No Hit
GATCACAGGCGTGGCATGAAACTTTGGGCTTTTCTTGATCAGCGAGCAGG12.1739130434782608No Hit
GGCCCATCGTGGTCTTGCCGGAGCCCGACTCGCCCACCACGCCCAGGGTA12.1739130434782608No Hit
CCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGT12.1739130434782608No Hit
GGTTCCTTCCAGTTCTGTGCCTTTGTCCTAAAGGCATCATCAGCAGTCTC12.1739130434782608No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)