FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003619999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCAGCCTCCCAGAGTGCTGGGATTACAGGCATCAGCCACCGTCCTGGC21.9801980198019802No Hit
GCCTTGTGGTTGTCCACTGCCAGGCAGGCATTTCCCGGTCAGCCACCATC21.9801980198019802No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21.9801980198019802No Hit
CAACATGGGTGGCTCTAGAGAATTCTGAGCCCCTGTGGCCCATGGAATGC21.9801980198019802No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.9801980198019802Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCTTCACAGAGGATACCATTGTCTTCCTGCCCCAAACCGATAAGTGCAT10.9900990099009901No Hit
GTAATGAAACATGAATTTAGTTTGGAAAATGGTTACAACCATCTAAACAA10.9900990099009901No Hit
CTAATGAAGTCTGCAGTTACAGACTCTCAAAGCCAAGCCTGTACAGTCTG10.9900990099009901No Hit
TTGTGTAGTAGTGCCAGCAGGACAAACAAGCGCTGAATTCAGTATATTCA10.9900990099009901No Hit
GTGGAATGCTGGGTGCTGGAAGGGAATCTCTTATTTTAAAAAGAAAAGAT10.9900990099009901No Hit
GGGCAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAT10.9900990099009901No Hit
GGGGGGTCGAGTGTGAGTTGGACGGGTAACGACCGGGGGGTCCTGCATCA10.9900990099009901No Hit
GGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAATGA10.9900990099009901No Hit
AGCAAATACAGCCAAAGGCTATTTACGGAGAAATTGAATTGCCAAAAGTC10.9900990099009901No Hit
CTATAAAGCCTGCTTGGATAATCAGCTAACCCTAATTCATCTCATTTCCT10.9900990099009901No Hit
GTGTCAACGCAGAGTACATGGGATGTGGAAATTGTTAAGGAAGTCAGCAC10.9900990099009901No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGTGGGTGGGGGGGGTGGGTGGTGG10.9900990099009901No Hit
GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGG10.9900990099009901No Hit
GGGGTGGGGGGGTGCGGGCGGGGTGGGGGTCGGTGGCGGCGCGGCTGGGG10.9900990099009901No Hit
TGATGGGGTTGTCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCAATGTGC10.9900990099009901No Hit
GGGTCAGGGACATTCAAACCATAACACACACATTCTGATCTTTACCAAAT10.9900990099009901No Hit
GTTGAAGTGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGC10.9900990099009901No Hit
GTTCAGGGACTCAGCAATGCACTTTAGGACTGAGCTAGGAGGCAAATATC10.9900990099009901No Hit
GGGGTGGCTGGGGGGGGTTGGAGGTGTAGCGTCCGGGGGGTGGTGCGGCG10.9900990099009901No Hit
ATGCTAAACGGCTTCCTTGGTACCCCGCTCACCAAAGCGTTCAGGATGGC10.9900990099009901No Hit
GTATAGACCACAGTTATTGGGGGAGAAGGGCTGGTAGGTTAAATTATCCT10.9900990099009901No Hit
CCTAAGGAATTCCCCTGCTTCAGCTCCTAGCTCAGCCACTGACAGCCCCT10.9900990099009901No Hit
TTAAGATTCTTGGTCTAAGGGGTAAGCAAATATCTTCCTGAGACTGGGAG10.9900990099009901No Hit
CTACAGGTATGTGCCACCACACCCAGCTTATCTTTGTATTGTTAGTAGAG10.9900990099009901No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACGCTGCGG10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
CTTTAATTTCTGTGTGAGACCAAAGGAGGAGAGATGTGTTTTGTTCAAAA10.9900990099009901No Hit
CCCATGTACTCTGCGTTGATCCCACTGCTTCCCATGTACTCTGCGTTGAT10.9900990099009901Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCATCCATGTGTGGACTCAAGTCCTTACCTCTTCCGGAGATGTAGCAAAA10.9900990099009901No Hit
GTTTTCACACTGCTGTAAAGAACTGCTCAAGACTGGGTAATTTACGAAGA10.9900990099009901No Hit
CATATACCCAATGCCTGTACCCCCATTGTATCTTGGAAGTAACTAACTTG10.9900990099009901No Hit
GGTTATGAGCCTGCTGCAGCCCCTCAATATCACTCAGGTCCTGAGCCATG10.9900990099009901No Hit
GTGTATAAGCAGGAGTCATTCTTTACACAGTGTGTGCAATGAAGGGATGT10.9900990099009901No Hit
GAGGAATGCTGGGTGCTGGAAGGGAATCTCTTATTTTAAAAAGAAAAGAT10.9900990099009901No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGTGGG10.9900990099009901No Hit
ATCCACCGGAGGGCAGCCGAGGTCACACTGGGGGCGCTGGCGCCATATGC10.9900990099009901No Hit
CCTCACCAGAGGTGCCACCTCCAACATCATAGTGGAGGCACTGAAAGACC10.9900990099009901No Hit
AAGCAATCCTCCTGTCTCAGCCTCCCGAATAGCTGCGACTACAGGTGCCC10.9900990099009901No Hit
CGATACAAGGGCACAAGTTTTCCAACTATGAACTCCTAACCTAATCGACT10.9900990099009901No Hit
AGGCGGCTCTTTGACCAAAGAGTCCCAATGTGAAATCCGTCTACAAAAAG10.9900990099009901No Hit
CTGCTACCTTCATCACCAAATTGCACTCGCTCCTTCCTGGAATCCTTTTT10.9900990099009901No Hit
GGGTTCAAAGAGCTCGTTGTCTCCCCATCTGCCGCTCCTGCACACGCGTG10.9900990099009901No Hit
GTCACCCAGGCTGGATGGAGTGCAGTGCCACAATCTCAGCGCGCTGCAAC10.9900990099009901No Hit
GGAAGCAGTGGTATCAACGCAGAGTAAATGGGAAGCAGTGGTATCAACGC10.9900990099009901Clontech Universal Primer Mix Long (96% over 25bp)
GCTTTGGAATCTTGGTAGTATGAAGCGGCCAGTCTGCAGGTCAGATTAAG10.9900990099009901No Hit
TGGTAGCGCATGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGA10.9900990099009901No Hit
GTTGTTGGGGAGCTGTGGTGTCAACGGAGGGTGCATGGGAAGCAGTGGTA10.9900990099009901No Hit
GTTTTTGCCATGCTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAATGAT10.9900990099009901No Hit
GGCGCAGCTGCACCAACTATGTGGCGGGCAAGGATGACTATGTGAAGGCA10.9900990099009901No Hit
GGACGATGGATAACATGACTTCATCAGCACAGATAATTCAGAGATCTTTC10.9900990099009901No Hit
GGTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGT10.9900990099009901No Hit
GTTTAGAGCATTTCTTTGTTTGAAAAAAACTAATTTAGAAAATTTTTCAT10.9900990099009901No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG10.9900990099009901No Hit
CACACACACACACACACACATACACACGAAGTAAGGATATCAACAATGCA10.9900990099009901No Hit
GGTGTTGCTCCATGGCCTGGGCTGGAGTATAGTGGTATGATCATAGCTCA10.9900990099009901No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCT10.9900990099009901Clontech SMART CDS Primer II A (96% over 26bp)
GGGTATGAGCCTGCTGCAGCCCCTCAAAATCACTCAGGTCCTGAGCCATG10.9900990099009901No Hit
TGTATGTAAAGCATTCGGAAAAAAAGAATACTAAATTACTGTTGAAACTA10.9900990099009901No Hit
GGGGGGGGGGGGGGGTGTTTTGGTTTGTGTGGGGGGGGGGGGGGGGGTGC10.9900990099009901No Hit
GATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGAT10.9900990099009901No Hit
GGGCGGGGGGGGGGGCCGGGGGGGGGGGGGGGGGTGGGGGGGGGGTGGGT10.9900990099009901No Hit
GGGTTCCACGGTACTCACCACAGGGGAGTAAGTTGGTGGGAGGGATGCTG10.9900990099009901No Hit
AAGGGCAGGTGGGGCCAGGGGCTGGGCCCCTGGAACTGGAGGGAGTGAAG10.9900990099009901No Hit
GTACATGGGAAGGAAAAGATAAAAGGTTTCTAAAACATAACGGAGGTTGA10.9900990099009901No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
AAGGGCAGGTGGGGCCAGGGGCTGGGCCCCTGGAACTGGAGGGAGGGAAG10.9900990099009901No Hit
GCGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTT10.9900990099009901No Hit
GGGTCATAGACATTCAAACCATAACACACACATTCTGATCTTTACCAAAT10.9900990099009901No Hit
GCAGAGTACATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
CCCCAGTACTGATCCTAGAATAAACAGGGGGATAGCCGATCCCTGTCTCG10.9900990099009901No Hit
ATTTAATGGTGTTTTTATTTCCTGTCTGAAATCTCAAAATAAACAAACAT10.9900990099009901No Hit
CAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAAT10.9900990099009901No Hit
GCCTAGTGGTTGTCCACTGCCAGGCAGGCATTTCCCGGTCAGCCACCATC10.9900990099009901No Hit
GGTTAGAGCATTTCTTTGTTTGAAAAAAACTAATTTAGAAACTTTTTCAT10.9900990099009901No Hit
CCAATGTACTCTGCCTAGATACCAAAGCTTCCCATGTACTCTGAATACAA10.9900990099009901No Hit
CAGATAGCAAGATGAAAACAAAATTTTTTTAAAAAAGAGAAATATAAACG10.9900990099009901No Hit
TGTTTGTACAGCTTTAGGAAATAAAGAATACTCAAATACTGTGGAAACTT10.9900990099009901No Hit
GGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGTGGGGGGGGGTGGTGGGT10.9900990099009901No Hit
CTATAAAGCCTGCTTGGATAATCAGCTTACCCTAATTCAGCTCTTTTCCT10.9900990099009901No Hit
GTTTTTGCCATGCTGCCCAGGCTGGTCGCAATCTCCTGGCCTCAAATGAA10.9900990099009901No Hit
GGGAAGCTGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAATAAAATAT10.9900990099009901No Hit
GCCTGGACTTGGCCCCTGCCACCTCCTGCCTCAGGTGTCCGCTATACACC10.9900990099009901No Hit
AGTTAGAACCAGATATGCTTTGTCTTGATTCTCAAGTAGAATAATCTTCA10.9900990099009901No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGG10.9900990099009901No Hit
GTGGGTGGGTAGGGGGGGTGTCAGCGCTGAGTTGAGGGGAGGGAGTGGTA10.9900990099009901No Hit
CATAAACCCAATGCCTGTACCCCCATTGTATCTTGGAAGTAACTAACTTG10.9900990099009901No Hit
GGGGTTCAGCATATTGGCCAGGCTGGTCTTGAACTCATGACCTCAAATGA10.9900990099009901No Hit
GGGTAGGTGGGTGTTGTATAAGGCTCTTAATAAGTCTACACTGTAGTAAT10.9900990099009901No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTT10.9900990099009901Clontech SMART CDS Primer II A (100% over 26bp)

[OK]Adapter Content

Adapter graph