FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003620357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003620357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGCAGTCTGGGCTGTAGAGTTAGGCTAGAGAATTAGTTTGTGGGGC43.1746031746031744No Hit
GTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACAT32.380952380952381No Hit
GTAGGTTAATAGTGGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGT32.380952380952381No Hit
GGCGTGCCTGATCGAGTTGGGAGCCAGCGTGGCACAAGGCTTTCTGTTTG21.5873015873015872No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA21.5873015873015872No Hit
TCGTCGTGGTTGCGCCGCTGCCGCGCCTCGGCCTGCGGCTCGAGCGCATG21.5873015873015872No Hit
GCACATCAATGGAAGTCCAAAACTCGCACCAGAAGTTGCCAAAAGTCCAC21.5873015873015872No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT21.5873015873015872No Hit
GATGGAATCAACTCGATTGCAATCGAATGGAATGGAATGGAATTAACCCG21.5873015873015872No Hit
GTCATGGTGGACCTCAGCGGGAGAGAGGTGGAATTGCATCTGCGGCTGCG21.5873015873015872No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA21.5873015873015872No Hit
GAGCAAATGTTTCTGTTTACTGCACTTTTTGTAACTGAAGGTGATAAATT21.5873015873015872No Hit
CCCCGAGACCGCAGGCGTCACAATGTAGCAGGGACCCCAGGCGTCGTGCT21.5873015873015872No Hit
ACGTGGGCGGCACCAAGATCGAGGGTGGCGTAGTGGACGAGGCGGGGGCC21.5873015873015872No Hit
ATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAAT21.5873015873015872No Hit
TTCCATTTCTCTCCATTTCAAGTACTTTCAAAGACAAGAATCTTCTGGTT21.5873015873015872No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA21.5873015873015872Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGA21.5873015873015872No Hit
ATTCAATTCCATTCTATTCCATTCCATTCCATTCCTTTCCACGTGAGTTG10.7936507936507936No Hit
TGCCGGTCACGGCCGTGGGGGTGAGCCCCGCGTTGGCGCCGGTGACGCTG10.7936507936507936No Hit
CGTCGGAGACGACCTTGGTCACGACCGGCGTGCGGCCCGGCGGCAGCTCG10.7936507936507936No Hit
CACTTGTATGGCTTCACTTTTACAAAGCAGGTAACAGCCTTCTTCAAAGT10.7936507936507936No Hit
CCAGAGCAGCGGGGCTCCTCGCCCTGATCAGCCAATCCTTGAGTCCCGTC10.7936507936507936No Hit
ATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTG10.7936507936507936No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCCTGT10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
TAATTGCACATTTTCAGAAGCAGTGCCAACAGGGAATGGTTAATAATAAA10.7936507936507936No Hit
CGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAG10.7936507936507936No Hit
CATCAGAGGAATGAAGTGGCTAAGGGTGCCTCCAGCTCTAATAGCCACAA10.7936507936507936No Hit
CATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCA10.7936507936507936No Hit
GGACAGTACCCTGGAGAAGGATAAATTGGCAAGAAAACTGGCATCTTTAA10.7936507936507936No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
GGTATAAACAGTTGGTGAAGAGTTTTAAGCTCAAGGCCTAGCCTGTCTAA10.7936507936507936No Hit
CCTAACATAATAGATGTGGTAATGAAACTTTCAGATGAATAAATAAATTC10.7936507936507936No Hit
GGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAG10.7936507936507936No Hit
ATCAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACAATGCGTTTATA10.7936507936507936No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGA10.7936507936507936No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7936507936507936Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TGGTTCCTTTGGTCGCTCGCTCCTCTCCCACTTGGATAACTGTGGTAATT10.7936507936507936No Hit
ACCTGCATTAGACTATCAGACAAGAAATAGGTTTTTGTCAGCAAAAACCT10.7936507936507936No Hit
GTACATGGGGAGGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGG10.7936507936507936No Hit
GCCGTGGAGTGGTGGTGGTGGTGATATATCAATACTGACAGCCATTACTA10.7936507936507936No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCACATGTACTCTGCGT10.7936507936507936Clontech SMART CDS Primer II A (96% over 26bp)
GTCTCACTCTGTCGCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACT10.7936507936507936No Hit
AGATTGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAGAA10.7936507936507936No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTC10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
GTGGGTGGACCGGTGCTTGGGTGCTGCCCTTACTTGGACAAGCATCCCAC10.7936507936507936No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.7936507936507936No Hit
CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAAT10.7936507936507936No Hit
GTACATGGAGATGTGGACGAGTGTCTGCAGGGCCGCTGTGAGCAGGTCTG10.7936507936507936No Hit
GCGTCCAGCCGCAGCGGGGCCAGCAGGCTCTGGTTAATGGTGACCAGGTG10.7936507936507936No Hit
GACCCCGGTCCCGGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGG10.7936507936507936No Hit
TCTACGAATGGTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACG10.7936507936507936No Hit
CCGCCCGCCTCTGCCTCCCAAAGTGCTGCATTACAGGCGTGAGCCACCTG10.7936507936507936No Hit
GCTCAGGGGCCGCTTCCGCCGCCGCAGGCCGGATAGCAAGCCCCGGGCAT10.7936507936507936No Hit
TTTTAGCATTGCCAAGGGTGATATTTGTCATATTAGAGGCAGAATACCAC10.7936507936507936No Hit
ACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTT10.7936507936507936No Hit
CCTCTGTTCAAATCCCTGTAACAGCTCCCATCTCAGAGTGAAAAATCAAA10.7936507936507936No Hit
GTTGTATCAACGCAAAAAAAAAAAAAAAAAAAGTACCTGTCTCTTATACA10.7936507936507936No Hit
CCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTT10.7936507936507936No Hit
TAGTAGAGATGTGTTACCCAGAATGGTCTTGATCCCATGACCTCGTGATC10.7936507936507936No Hit
ACGCAGAGTACATGGGAGCAGTGGTATCAACGCAGAGTACATGGGAAGCA10.7936507936507936Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTATAATGAGGCATGTGCAGCTCCCCATTCCCAGCATGGCCTGAACTAGT10.7936507936507936No Hit
GTCCTGCAGCCCGATCTGCTTTCGAAGGTCTATGAGGTGAACGTCGAACG10.7936507936507936No Hit
CCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGG10.7936507936507936No Hit
TCATTATAGACCTAAAAAAGTCATAATTTGTTGTGAATTAAATAAGCTCA10.7936507936507936No Hit
AATTTCACCTCTAGCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAA10.7936507936507936No Hit
TCGCCCAACCGACCAGCTAGATTCTTCTCTGAAGAATTTTCTCGTGCCGG10.7936507936507936No Hit
GAGGGATATAGGTTTTCATTTCTCTTTCATAACGGGCCTTGTCCGCTTTT10.7936507936507936No Hit
GCTTTACCCAGGAACAAATGTGGAGAGGAACTCCTTGAAACTGTGTTCTC10.7936507936507936No Hit
TCCTTGCGCAGCTCCTGGCCTCCGCGCTCCGCGGGCTGGGCGTCCAGGTG10.7936507936507936No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.7936507936507936Clontech Universal Primer Mix Long (100% over 23bp)
TCTTTGATAACGTCCACAAAGTGGGCGTCCGTTTTCTCCCGGATGTTCTT10.7936507936507936No Hit
TTGAGAATCTTCTCTGGAGACAGCTCTCTTTGGTTCCACAACTATTCCAT10.7936507936507936No Hit
CTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGTCA10.7936507936507936No Hit
CTACAAAGTGAGATGGAAGGAAGACAAAAGGATGGGGAATTTCTTTACTG10.7936507936507936No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTGCTTCCCATG10.7936507936507936Clontech SMART CDS Primer II A (96% over 25bp)
AGGCGGAATTGCGAACCGGAGCGAAGTTCGGGCCGGAACTCGTAGATGCG10.7936507936507936No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
AATTCGGTCTGCGCGCCATCGGCGACTCCTGGATATCGGATACGGCTTTC10.7936507936507936No Hit
CCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGG10.7936507936507936No Hit
GACCCAGGGTGCTGGAGGCCCGGGGTCACCTGAGGACTGCAGAAGTCCTG10.7936507936507936No Hit
TAGTTGGACTTTCTAGCATATATGTGTCCATTTCCTTATGCTGTAAAAGC10.7936507936507936No Hit
GTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCC10.7936507936507936No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.7936507936507936No Hit
CCGCAGCGCCGCGTCGTGCTCGCGTGGCGGCGCAGCTTTCCGCGCTACGA10.7936507936507936No Hit
GATGTGCAGTGCTCCGGTGCAGCCCTCCACAATCTCCTCCATCCTCACAC10.7936507936507936No Hit
CCATTAATCCTTTCATGAAGACTGGCAAACACATTCAGTCCTGCCAACCT10.7936507936507936No Hit
TTCATCAGGTGGTCCACGATGAATCCGATGACGATCGCGAAGACGATGGC10.7936507936507936No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
CCTTTATCGATGTCCTCGGCCAGGCCGTCGGGGAAGCTGTCTCTTATACA10.7936507936507936No Hit
TCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACG10.7936507936507936No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.7936507936507936No Hit
GGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGA10.7936507936507936No Hit
AATAAGCATCGCTCAAGACGAAAGTGGTGGATCAGATTACCGATTGGTTT10.7936507936507936No Hit
TCATGATAGTGTGAGTGCATTACTTCACCTTCTGCCTCGGTCCAGACTTC10.7936507936507936No Hit
GAACTGCCACGTTAAGTCAGGTGTAACGAGATGACAATGCTTTAATCCTG10.7936507936507936No Hit
CCTAATTGGTAGTGTAGAAGTGAAAAAGGTAATGGCATGCCCCAGGTGTA10.7936507936507936No Hit
GTGTGACAACCTGTGGGACCTGACTGATGCCAGCGTCGTCTGCCGGGCCC10.7936507936507936No Hit
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG10.7936507936507936No Hit
GAGCAGTACCGGCCAAGCATAATGACAGAGAGAGGCAGATTTCAGGGAAG10.7936507936507936No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA10.7936507936507936Clontech Universal Primer Mix Long (95% over 21bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTCCGTTTAAACCACTGATTAC10.7936507936507936No Hit
GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACC10.7936507936507936No Hit

[WARN]Adapter Content

Adapter graph