FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003620358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003620358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCCACATTCTCTCTTCTCTCTCTCTCTCCCCATTATAATTATGCTTTT43.1746031746031744No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG32.380952380952381Clontech Universal Primer Mix Long (96% over 26bp)
GTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCC32.380952380952381No Hit
CTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAA32.380952380952381No Hit
GTCTCACATACTCAGCTGAGAATTCTTCAATAGGTATGATACAAACTTGA21.5873015873015872No Hit
CGCATGGAAGATCAGGACCGAAAGTGGGAGGGACACAGGAAAACGTTGGC21.5873015873015872No Hit
CTTCCATGCACTGCAGTATTTATCCACAATTCTAGACATTTTCCATTTTT21.5873015873015872No Hit
TGGCTGACCCGCAGCTCGGCGACGAGGTCGGCGATGCTGCGCTCGATGGC21.5873015873015872No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA21.5873015873015872No Hit
CCATTCATACAGGTCCCTAACAAACCCACAGGTCCTAAACTACCAAACCT21.5873015873015872No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT21.5873015873015872No Hit
ATGACGAGCCGTTCCTGGCCGCGATCCCGAGCCAGCACCCGCTTGCGCGC21.5873015873015872No Hit
GGCCATCGTGTTTGGCAATGTGCTGGTCATCACAGCCATTGCCAAGTTCG21.5873015873015872No Hit
ACCCTACTCAACTTCTGCTGGTATAGAGGCATTCTCTTGTCAATTTCCAG21.5873015873015872No Hit
TACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGG21.5873015873015872No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
ACACTGTGGTGCGGCAACTCCCCGGCGCGGCGAATCTTCGCGAGTATCGG10.7936507936507936No Hit
CAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCC10.7936507936507936No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGG10.7936507936507936No Hit
TTATAAATCCATGTGTCCTCATGGCTACTGTGTAGCTCTATCTAGATTAT10.7936507936507936No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG10.7936507936507936No Hit
GATTACAGGCGTGAGCCACCGCGCCCGGCCAATTTTGTATTTTTTAATAG10.7936507936507936No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGCTGTC10.7936507936507936Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACGTGGGGGGGGGGGGGCGGGGGGGGGGGTGCCCCCCAGGGGGGGGGGGG10.7936507936507936No Hit
GCGGTCGGCGATGACGCGTCGGAAGGAGACGCAGGTGGCGGAGGCACAGA10.7936507936507936No Hit
CGCTGCGATCTATTGAAAGTCAAACCCTTGTGTCGAGGGCTGCTCTGCTA10.7936507936507936No Hit
CCTTGAGATACTTCACATTCCAGGAGTCTTCCATCCACCCAACCGTCCAT10.7936507936507936No Hit
ACATAAATGTCAGAATAGACCAAGACTCATGGAAAAGAACAGCTGTTCAA10.7936507936507936No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC10.7936507936507936No Hit
GCCCAAGGTGGCCAAGGCTTTCGAATGGGCCAGGATGGAACTGGACAAGC10.7936507936507936No Hit
GCGCCCTCCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGC10.7936507936507936No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGAAGCAGTGGT10.7936507936507936Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGAAGCAGTGGTATCAACGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.7936507936507936No Hit
GTTTCATGCTATGGTTAGGTTTACCTTAATACTTCTTTTGTAGTTGCGGA10.7936507936507936No Hit
CGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGC10.7936507936507936No Hit
AGATAGATGATTCCACAGAGAAAAAGGGGACCACTAGGCAGCTGAAAGGA10.7936507936507936No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTA10.7936507936507936No Hit
TGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGGGC10.7936507936507936No Hit
GACATCTCCCTAGGATATTACGAATAATATTACAGAATATACACACATGA10.7936507936507936No Hit
CGTGCGGCACGGCCTTCGGTGCCGGCGACTCCGGCATCAAGTCGGAAAGC10.7936507936507936No Hit
ATCCTTGCCCGAAGGCAGCTCTGCCCAGAGCCTGGGTGGCGTTCTCGAAG10.7936507936507936No Hit
GTATTCACCTCGCGCTCAGCCGCCTTCTCGGGCCGCGGCGCCCAGGTGCG10.7936507936507936No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7936507936507936Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCCCGCACGCGGTGATCCAGCAGCCGGTGCGTGTTGCGCGGCTTGGCCT10.7936507936507936No Hit
GTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT10.7936507936507936No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
GAGCTGGACGAGGACGACTTCTCGGTCGATGATCCGGCGCAGGCGCTCAT10.7936507936507936No Hit
CAGGAGGCATGTGCCAGAGCAGGCGGCCGCATTGCTGTCCCAAGGAATCC10.7936507936507936No Hit
ACGTGACGCTGAGCCCCTGGAGTGGGGACAGCAAGTGCCACCAGCGCCGG10.7936507936507936No Hit
CGTCTACATCGGCTACCTGGGCCGCATCTACGAGTTCCGGCCCGAACTTC10.7936507936507936No Hit
ATAGTATTTGATGGGGAGGGGAAGAAGAGAACAGATTGTCTGATGGCTGT10.7936507936507936No Hit
CCCATTTTCCACCCCAAGTTATTTCATGAAAAAAACAAAAACAGTATATT10.7936507936507936No Hit
GCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAA10.7936507936507936No Hit
GAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCA10.7936507936507936No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTTGCTGAGTGTGCCGCGG10.7936507936507936No Hit
CCTGATATCGGGTCAGAGAGCCAAGGAGTCTCGCTGCAGCTGTGCAGAGG10.7936507936507936No Hit
TCACTACACCATCCGATACACAGGGTCACCAACTCTCAGGCTTCCAATTT10.7936507936507936No Hit
NTCTGATGCAAGGTTGTCGCAGTTCCTGTTTTCTGGTTAGGCCTGCATTG10.7936507936507936No Hit
CTGGTGGGCTGCAGCCTCTTGAAGCGCAGTCGGATCACGGGGGTCCCACT10.7936507936507936No Hit
GGCCTACACGCTCGGCGGCACGCCCGCGGGCTGGGTGGCGGGCACCTACA10.7936507936507936No Hit
GGCCCAGGCAGCGTCAGCGGGAGAGCTTCTCCCCGACCAGCCCAGCCCCA10.7936507936507936No Hit
CTCGTGGATAAGTGTCCTTTGGTAGTGCCAGGAGTTCGAGGCCACTATGG10.7936507936507936No Hit
TCTATGGCTTCTGGTCACAGAGACTTCCAAAGTCAAATCCTCCCCTTCTC10.7936507936507936No Hit
GGGCGGCCCGCCGGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAAC10.7936507936507936No Hit
GTCTTTATCTCTCGATTTCTGAAGGACAGCTTTGCCAGGTAATCTATTTT10.7936507936507936No Hit
TCTCCTCAGGCTGCAGAACCTGCGTTTTCTTCTCTAAGCCACCAATCACT10.7936507936507936No Hit
GGTTGTTGCATCACCTGATAATGATGAAATTATCTTTACCATTATGTTCT10.7936507936507936No Hit
CCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGG10.7936507936507936No Hit
ATCAACTGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGA10.7936507936507936No Hit
CTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGA10.7936507936507936No Hit
GCATTGTCCTGTCTAATGGGAGATGTTAACTAAGTGAAGAACTGTTTCCA10.7936507936507936No Hit
CCCCCCCCTCCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGC10.7936507936507936No Hit
GTTCCATTCCATTCCATTCCATTCTATTCGGGTTAATTCCATTCCATTCC10.7936507936507936No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT10.7936507936507936No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCCTGT10.7936507936507936Clontech Universal Primer Mix Long (96% over 28bp)
GTCGGCCGGCCCGGGCCGACGCCCCGCTGCAAAGCCGACGAACACGACGA10.7936507936507936No Hit
GGGTTATGGTCGTCATATTCCTGAAGATCAACTTACAGAAGTTAACTTAT10.7936507936507936No Hit
GACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGA10.7936507936507936No Hit
CTCAAGGACTGTGAGGTAATGAGAGATCAAAAAACAAAGCGCTCAAGTGG10.7936507936507936No Hit
AGACAGAGTTTCACCATGTGGGTCAGGATGGTCTCGATCTCTTGACCCAC10.7936507936507936No Hit
GAGTATACAGGGCAAAATGGTGCTAGATATGTTTCACGGTGACTGTCACT10.7936507936507936No Hit
GAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTA10.7936507936507936Clontech SMARTer II A Oligonucleotide (95% over 21bp)
CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA10.7936507936507936Clontech SMART CDS Primer II A (96% over 26bp)
CAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATG10.7936507936507936No Hit
TCTTTGGCTTCTGGTCACAGAGACTTCCAAAGTCAAATCCTCCCCTTCTC10.7936507936507936No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
AGTCTACACAAGAAAGGAAAGGCAATAATCCAAACCACTCTCCAAGTTCT10.7936507936507936No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
GTTCCATTCCATTCCATTCCATTCTATTCGGTTTAATTCCATTCCATTCC10.7936507936507936No Hit
TCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCAT10.7936507936507936No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7936507936507936Clontech Universal Primer Mix Long (96% over 26bp)
GAATTCATCTCCAGCAGTGGCCTGAAGAGGAAGAGAAAAAAAACAAAAAA10.7936507936507936No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTTAAAAACAATAAT10.7936507936507936No Hit
GCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGA10.7936507936507936No Hit
GTACTTTTTTTTTTTTTTTTTTTGCGTTGATACAACCGGTCACTTAAACA10.7936507936507936No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT10.7936507936507936No Hit
GCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCC10.7936507936507936No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG10.7936507936507936No Hit
ATATAAGCTGTCAGAAACTGCCCACCGTGCAAACTACTGGATGTTCCGCT10.7936507936507936No Hit
ATCAACGCAGAGTACATGGGGGGCTGGACGACGTCTGGCCGGCTCCCGGC10.7936507936507936No Hit
GTGCAAACTTGTCGGGAGGAGCATAAGAAGAAGCACCCAGATGCTTCAGT10.7936507936507936No Hit
GTCTACAGTTGCTTTCGCTTCCTACGTGATGTTTTTGCAGATGAGTTCAT10.7936507936507936No Hit
GGTCTGAAGTGGGGTGCAGATTTGTTCATCAGCAGAAAGTTACTCGGGTC10.7936507936507936No Hit
CTTCCCCGACGGCCTGGCCGAGGACATCGATAAAGGCTGTCTCTTATACA10.7936507936507936No Hit
ATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCG10.7936507936507936No Hit

[OK]Adapter Content

Adapter graph