FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003620407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003620407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGGAGGAGGTGAAGCGAATCCAAAGCATCCCGCTGGTCATCGGACA313.636363636363635No Hit
CCTGTAAGTAGTCTAAAAATTTTCCAGCCCTTTTTCTACTTGATGTTCGA14.545454545454546No Hit
GCTGAGTATCCATCATGAAATTGTGCACGTGTTTTTCTGCTTTGGTAAGT14.545454545454546No Hit
CTCCTACATTTGCTATGCGTCTCAAGATAAGGATATTATCTCATATGGCG14.545454545454546No Hit
AGAGAATTCTCTGCTCCCCACCTCTAAGTTGCCAGCCCTCCTAGAGCTAC14.545454545454546No Hit
ATAAATATACTGTCTATTTCTAATGCAATCCGTCTTTCCTGAAAGATCTT14.545454545454546No Hit
ACAATAAGCATTGCTATGGCAACAAAAGAAAATATGACTTCACAGAGAGG14.545454545454546No Hit
GGTCACACCCAGCCCAGAAGACGGGTCCTCCAGTTCCAGTGACTCTTTCG14.545454545454546No Hit
GGAAGGAGACGCTGCAGCGCGCGGACCCCCCAAAGACACACGTGACCCAC14.545454545454546No Hit
ATGCTAAGTATTTCACAAGTGTAATTCCATGAATTCTTTTATTTTTTTTT14.545454545454546No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC14.545454545454546No Hit
CGTTAGGTCAAGGTGTAGCCCATTTATTGCCCCCTCATGGGCTACACCTT14.545454545454546No Hit
ACCCAGTCTCAGGCATTCTTTATAGCTGTGTGAAAACGGACTAATACGGC14.545454545454546No Hit
CACAGACACATGCAGGTGCCTTTGCAGAAACAAAGTCAGGGTTCTTCAAG14.545454545454546No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA14.545454545454546No Hit
CTTTTCTATATACTTCGTTCCCCGCCAACCGCAACCATTGACGCCATGTC14.545454545454546No Hit
CCAAGGCAGGGAGGGGACTCAATGTTTTACAAGCAGAGGGAAAACCAAAG14.545454545454546No Hit
CTATACACGTGGGCCCTGCCCTTTAGGCTACACTCTAGGCAGAATGTACA14.545454545454546No Hit
CACAGATACAGTGTGGATCCGAAGCAGTTGCTGCCCCCATCCCTTCCCTG14.545454545454546No Hit
GAAATGCAGAATCCTTCTTTCAGTAGCCTATATACAGTTATCTCCTACAC14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)