FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003620886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003620886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37920312
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT401830.1059669551242089No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA401060.10576389772320438No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA399410.10532877472105187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)