FastQCFastQC Report
Wed 11 May 2022
EGAF00003620924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003620924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59774259
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT5613710.9391517509234201No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT5490270.9185007211883631No Hit
TTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTT1496810.2504104651468787No Hit
TTATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTT1084710.18146774517104428No Hit
TTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTT995760.16658675768778664No Hit
ATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTTTTTTT701090.11728961792734226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)