FastQCFastQC Report
Tue 10 May 2022
EGAF00003621225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19280
Sequences flagged as poor quality0
Sequence length146
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT760.3941908713692946No Hit
TGCCTGGACAGTGGCCCTGCAAGCAGCCAAGGATGGGGTCTCCACCACCT440.2282157676348548No Hit
GTACATGGGACACCCCGCGCAGGATTCGGACGGAGAGCGCGAGGACTCGG370.19190871369294604No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA360.18672199170124482No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT350.18153526970954356No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT290.15041493775933612No Hit
GGTTTACTGAGAGCATTAGGGGCAACAAGGGAGCCCTGGGCATCTGGGGA270.1400414937759336No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA250.1296680497925311No Hit
GAGATACGGAGGCCCGGTCAGACTCTCCCTCTGCACCTCAATGGAAACGA220.1141078838174274No Hit
GTTTAATGAAGTCTGAAAGGTAAGCGCCATCGTGGTCAGAGATACGGAGG220.1141078838174274No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG220.1141078838174274No Hit
GTACATGGGAGAGCTGAGCGACCCAGCCCGCGAGCGAGATGCCGGTGGCC200.1037344398340249No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG200.1037344398340249No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)