FastQCFastQC Report
Tue 10 May 2022
EGAF00003621289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284923
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT7660.2688445650228307No Hit
GCTAAGAGGTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGG6820.23936291559473966No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA5540.1944384974186008No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA5010.17583698051754335No Hit
TCTTTATCCAGTGTACAAAGCTTGAGACTTTGGTGCAGGCTCGTGGAGGC4420.15512963151447934No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA4220.14811019117445767No Hit
GTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGGACTTGGCT4120.1446004710044468No Hit
GTACATGGGAGCTCCAACCAGGGCAGCCTTCCTGAGAAGATGCAACCAAT4120.1446004710044468No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG3750.13161450637540667No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG3670.128806730239398No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT3590.12599895410338935No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT3590.12599895410338935No Hit
GTCGTAATAATGGCGTAAGTCAGATTCGCACTTTCGATCTTCCTGCACTG3390.11897951376336764No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG3160.11090715737234269No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG3040.10669549316832969No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT3030.1063445211513286No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC2980.10458966106632317No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA2860.10037799686231016No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA2860.10037799686231016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)