FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003621397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTGCACAGCAAAAGAAACTATCAGCAGAGTGAACAGGCAACCTACAG33.8461538461538463No Hit
CGTCAACACCTGCGGCTTCATCGACGAGGCTGTGCAGGAAAGCCTGGATG33.8461538461538463No Hit
GGTCGTAGCCGATCGATTCGAGCATCTTCATGCAGCCATACGGCGTGCAG33.8461538461538463No Hit
CCGTTAAAGCAAAAACAGTATCTTAGTTCTCAATTGGTTTCACATGTTGG33.8461538461538463No Hit
CTCTCGACGATTCGGCTTGTCTGACCGGAAGGAAACGCTAGAAATGATTG22.564102564102564No Hit
GGTAGTAGCCCAGGCATTGGTAAGTTCGTTTGAACTGCACAGAAATAGAG22.564102564102564No Hit
CCCCGACGCCCGCCGAACTGGAAAACGCCAAGGCCCGCTTCCTCGGCAAG22.564102564102564No Hit
GCCTCATCCATGAGCAGGATGTCGGTCTCGGCTGCGAGTGCACGAGCCAG22.564102564102564No Hit
TCTGAGTTCACTGCTTTGTTGCATTGATTTATATGTTTTTTTCTACACAA22.564102564102564No Hit
ACATAGTGAAACCCCCATCTCTACTAAAAATACAAAAGTTAGCCAGGTGT22.564102564102564No Hit
TTGCCGCGCCACGCTCGACGGCGCACCGGTGCATGCTTGGCGCGCCATCC22.564102564102564No Hit
AGCCCGGGTGGAGCGCCTGGGGCAGAGTCCAGTGGATGGTGCTTTCAAAC22.564102564102564No Hit
ACTACTGCCAGCGCGTCACGCTGCCGCTGGACGGCAACATCATCACCATC22.564102564102564No Hit
GGCCCAAGCAGAGCCGACCACATACACAGCCCTCCTGGTCCTGGGAGAGG22.564102564102564No Hit
AACCGCTAATGCTCCAGGGCAAGGCAGGGTAGGTGAGGCACATGAACGGA22.564102564102564No Hit
ATTGCTGGGCGGGCTTGATCGGCATGCCGAACTGCTGGCCTTCAACCCGA11.282051282051282No Hit
GTCGGTGAGGCGCAGCAGCGGGTTGCTGGGGGTCTCGATCCAGATCAGCC11.282051282051282No Hit
GCCCGCAACACCCAGCCCAATCAGAATTTGTTTGGATTTCATTGATCTCT11.282051282051282No Hit
ATCTTAACTCAACAAAACATGATAGCCCTAGCTAAATTTTGGATTTAGAT11.282051282051282No Hit
CATCAGGGCTGAACCATGCAATATGTCCACGGGTGCGCGGTGCCATCCCG11.282051282051282No Hit
TACACACACACACACACACACACACACACATTTGTGGGTCTGCCTTCCTT11.282051282051282No Hit
CAGTAACCTTTGCAAAATGAACAATTTTATCAGGAGAATGACCATACGCT11.282051282051282No Hit
GTTCGGTGAATAGCCGCCCATGACCGCATCCAACGTAGCGTTGGACATAA11.282051282051282No Hit
GATCTTCGGACCCTGCAGGTCGGCCATGATGGCCACCTCGCGGCCCACCG11.282051282051282No Hit
CTGGCGGAGCGACGTGAGCGCTTCTTGATTAAAGAGAGAGAGCGGGTTAA11.282051282051282No Hit
GTCCTGGCCTGGCCCATGAAACCATCTTTCCCTCCTCGGCCTCTGGGCCT11.282051282051282No Hit
GCCTGGCCAACATGGTGAAACCCAGTGTCTACTAAAATACAAAAAAAAAA11.282051282051282No Hit
ATGCTGTTGTGGTAGGTTTTGCCCGCAGCATCCGTGGTGTCGTAGCTCAG11.282051282051282No Hit
TCGGTCAAGTCGATCACCGCCTACCGCACATTCGACCGTTTCCAGCGCGA11.282051282051282No Hit
ATTCCAAACTGTTACGCGGCCAACTTCAGGAAGTGGCGGACCGCCTCGCC11.282051282051282No Hit
CTGTCCGGCGAGTAGCCGATGCCGGGCACGATGTTCTGAGGCGTGAAGCC11.282051282051282No Hit
TGCGAGAGGTGCATGGCCTGCGATGGTGGCAGTGGCTGTGGCAAGAGAGC11.282051282051282No Hit
GTGTGCACGAGGGTCTCCTCGCCGACCCTGAGGCCGGACAGCGTGGTGGG11.282051282051282No Hit
ATACAACTTAATGGGGTTTCAAAAGAGTATGTCTGGAATGCATGAAATCC11.282051282051282No Hit
GTCGAGAGGCTTGCTCGTCTCCCACGAATCGGGTCTGTCCAGGCACCAGC11.282051282051282No Hit
ACTACTGCCAGCGCGTCACGCTGCCGCTGGACTGCAACATCATCACCATC11.282051282051282No Hit
ACACCGTGCCTTGCCGGCGAATGCGCTCGACGACGATGCTGTCATGCGTC11.282051282051282No Hit
TGAATGCAAACATCACATAGCAGTGTTTGAGAATTCTTCTATCTAGAGTA11.282051282051282No Hit
CACCTCAGATTGGCAACTGGGGATGACTCGGCACTACCTGTCGAAGCGCG11.282051282051282No Hit
CACCAGATCGGTACTGGCAGACGGAGAGCAAGGGCAACCAAATCAGAGGG11.282051282051282No Hit
ACGTCGACGAACTGCTTCTTGCCTTCGCCGCGGTTGGCGAACTTCACGTG11.282051282051282No Hit
GAACAGGCGCACGCCGGCATCGGCCTCCAGGTTCTGGATCAGCGCGCTGA11.282051282051282No Hit
AAGTAGGGATGCCTGGGCCGGGCGCGGTGGCTCACGCCTGTGGTCCCAGC11.282051282051282No Hit
GGAGAGGCCGCTCAAGTCGAAGTCAGTGAGGGGACACGGTGGAGAATTTT11.282051282051282No Hit
GCAAAAAGACGCGGCGCGCCCTGCAGAGGGCGGCGGCCACCGTGTCGAGT11.282051282051282No Hit
TGGACGCCTACGTCAAGCGTGATCGGGTGTGCCTTATCGGTTTCCGCCGC11.282051282051282No Hit
GGCCAAAGTCTGCTGCAGGGGCAGGGCGCTCATGGAGAATCTCTGCTAGA11.282051282051282No Hit
AGTGATGCTGGGCAAACATGACGTCGGCCTTGGCGCCCCACATCGTCAGC11.282051282051282No Hit
ACATAGTGAAACCCCCATCTCTACTAAAAATACAAAAGTTATCCAGTTGT11.282051282051282No Hit
GTAAGTCTGTCCCCTTCTTACTTGATATAGGGGCTACCCACTCCACATCA11.282051282051282No Hit
GGGCAACGGGGGTCTGGCTGATCTAGGTTGGGCTTGCTTCAGGGTGCTGG11.282051282051282No Hit
GAGTACAATGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATG11.282051282051282No Hit
TCTCAATTCTGCAGCTTGGCTAGAAATTGCGAACTTCCATTCATCGGATA11.282051282051282No Hit
GCTCAAGCTTCCAGTTGTCCTTTCTCAGTGGAATCACACAGACAGGGCTT11.282051282051282No Hit
GTACCGCCCTTGTACTCGGGGATGACGACCTCATCCCCGCGGGGTGAGAC11.282051282051282No Hit
CTTCAAAGCTGCTCTCTGAAACGGAATGTTCAACTCTATGAGTTGAATGC11.282051282051282No Hit
GTTTCTCGCGGTCCGCAGTCCCTTACGTGGCGGCAGGTGCCAGATCTAAC11.282051282051282No Hit
CTTAATACACACACAAATACACATGCTCACGCATGCATGCACATGTGTGT11.282051282051282No Hit
TGTCGGCACCTTTGAGGGACTCCTCGATCTCGTCAGCATGGTCCTCGGCA11.282051282051282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)