FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003621497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCC27.4074074074074066No Hit
GAGTTACATCACCTGTGTGATCAGTGCAGATATATGTCACTATGTCCCTG27.4074074074074066No Hit
CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTC27.4074074074074066No Hit
GATTTATTATGACTGGATATTGAATTTTGGCAATTTTTTTCCCCATCAAA27.4074074074074066No Hit
GCTCGACATCGGGCTGCCGGACACCGACGGCCGGGACCTGTGCCAGGCGC27.4074074074074066No Hit
CCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCG27.4074074074074066No Hit
GACCGCGTCGGCCTTGGTGTCCTTCTTCAACGACTTCTCGATGCGGCCGC27.4074074074074066No Hit
TCCAAATAGACTGGAATAAAAAACAGAAAGAACATGAAGATTTTGCATAT13.7037037037037033No Hit
TTTACTAGAGACGGGGTTTCTCGAACTCCTAATCTCAAACTCCTGACCTC13.7037037037037033No Hit
GGCATGCACCCGTAGTCCCTGCTACTTGGGAGGCTGAGACAGGAGAATTG13.7037037037037033No Hit
CTGCCCCGTGGGCTGCAGCAACAGCACCGACGCGCAGCGGGCGTGGGGGG13.7037037037037033No Hit
TATTGGACCTGCAGGCTTTCCCCTGTAAATCCGTGTTCTGTCATTGACAT13.7037037037037033No Hit
ATTTACACCCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGA13.7037037037037033No Hit
GTAAATTAGTTCAACCAATGTGGAAAGCAGTATACTGATTCCTCAAAGAG13.7037037037037033No Hit
GTTTTGAGAAGGAAGGTGGCTTTGTGAAGCCAGGTGGGGAATCATCACAG13.7037037037037033No Hit
GCTCTATTCGGACAGCTTCTTCACGCGCGAGGAATTCGACCGCGCCTACG13.7037037037037033No Hit
CTGCCCCGAGGGCTGCAGCAACAGCACCGACGCGCAGCGGGCGTGGCGGG13.7037037037037033No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA13.7037037037037033No Hit
AAGAATTCAAAAAGCGCGTCCAAATGGCCAAAAAACAGCCCAAAACGGGA13.7037037037037033No Hit
GTGTAGGTTTATGACGGAGCAGCATAAGATTTTCCGTGCCCTGTGAACAC13.7037037037037033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)