FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003621788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGGTGGAAAGGACCTGGACCACACAGAGCAGGACTCCAGAGCCTCC33.488372093023256No Hit
TCACGTCGGCGGGTGGATCGCTGGCGGCGCTGCTCGGCGCCTCGCCCGGC33.488372093023256No Hit
GCCCAAGCCAACCCTGTGACTGACATGTACGATTCACTCCTTTGAGTCTT33.488372093023256No Hit
ACCCGGGACGGCGCCCTTGATCATGATCAGGCCGCGCTCGGCGTCCACGC22.3255813953488373No Hit
GCGTAGGGCAGGCCGCGTTCCGTGCGGATGGTGGCGGTGGGGCATGCTTG22.3255813953488373No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG22.3255813953488373Clontech Universal Primer Mix Long (96% over 26bp)
GGCACGGGCACGCCGTGCGGAACGCGGAGACGCTGCGGGCGCTAGTCCCA22.3255813953488373No Hit
CGCTTGCCGTCGTCCAGCGGCTCGGCCGTCATCATGCCGGCGGCGGACAG22.3255813953488373No Hit
GTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACAC22.3255813953488373No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT22.3255813953488373No Hit
GCCAAGCACATACACCAAATGTCTGAACCTGTGGTTCCTCTCGTACTGAG22.3255813953488373No Hit
GGTGAACACCGGCCTGCCGAGCTTCCTGGTCACGCTCGCCACCTTCCTCG22.3255813953488373No Hit
GCCGTGAGCCCGGCGCGGATGAGCGCCTGGTCGTCGGCCACGAGGACCCG11.1627906976744187No Hit
ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATC11.1627906976744187No Hit
GTTTAGGAATGTGCTTTTGTACTTCCACTTGAATAAAGGTGTGTTTGGTA11.1627906976744187No Hit
GTCTCAACATTCGATCGGCCGGGTATCGCCCAGCAGGCATGCACCGTCGG11.1627906976744187No Hit
ACCACAGCCTCTGCACTTGTGCCTCTGATCCATATGACACCAAGACCAAC11.1627906976744187No Hit
GTCTATTGGCTGCTGACCAGCTAGAAGTGGTGGAGGTGAGATACAAACCT11.1627906976744187No Hit
GCCCTGGAGTTCAACCGACTGGCATCCAAGGTGCACAAGAATGAGCAGCG11.1627906976744187No Hit
CACCAAGGTCGGACGGCTTCCATTCGTTGATCTGGGCGGTGGCCTCCAGG11.1627906976744187No Hit
GCCCCCGGCCGGCCGGTCGGTCCACGAGACAGAGGAGCACCAGATGTAGT11.1627906976744187No Hit
GCCCGTACAGCTCCCCGATCAAGGGGGGCACCCAGCGGGTTGTGTGGAAC11.1627906976744187No Hit
GTGCCTTATTCTCACACCTGCCAATGTGGAGATACCATGCTGTTCCAACA11.1627906976744187No Hit
GTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGA11.1627906976744187No Hit
GAGCTCGGCCGGGCGGGCGACGATCCGGCCGATCACGTCGGCGGACAGCA11.1627906976744187No Hit
GGTGTCCTACCGCCTGCAGGCGACCGGGCTCGTGCCCACCGTGCCGCTGC11.1627906976744187No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC11.1627906976744187Clontech Universal Primer Mix Long (96% over 26bp)
AAAAAAAAAAAAAAAAAATTAACAAGGCGTTTTAACCAATGATACCCATT11.1627906976744187No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG11.1627906976744187Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT11.1627906976744187No Hit
CTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCAT11.1627906976744187No Hit
ATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCAC11.1627906976744187No Hit
CTCGATCGAGCTGCCCTTCTGCGCGACGCGGTAACCGGTGCCGACGACCT11.1627906976744187No Hit
CCGTAGGGTGACCCGCCGTGTCCCCGGTCGACCTCCTCGTCGCGGCCGGC11.1627906976744187No Hit
CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAA11.1627906976744187No Hit
CCCCCTCCAGATCACGGGGACGTTCGGTTACACGGTGCGCGTCGTGCCGC11.1627906976744187No Hit
GTGCCGAATGGGTCGCCCTCTGGCTAGGAAAGGTGGCCTTCGCCGCGCTC11.1627906976744187No Hit
TACGGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAAAATTGA11.1627906976744187No Hit
GCTCCAAGGAGTCGAGCAGGCGACTGCTCGACTCCTTGTAGCGTCATCCC11.1627906976744187No Hit
CAATCGCGCCCGCGCGTTCGGCGGCGAGGCGGATCGCTTCGTGATGCACG11.1627906976744187No Hit
TACCATGAGCAAGGGAGAAGCCCTAAGATGATGTGGCGGAGGTCGCCGGA11.1627906976744187No Hit
GATCAAGGAAGAGACCCGCTTGGTGTCTGTCATTGACCAGATTGACAAGG11.1627906976744187No Hit
GCCCCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGC11.1627906976744187No Hit
GAACAAGAGAATACAATTTCAAGAAAAATGGAAACAACTTAAAGCGACTA11.1627906976744187No Hit
TGTTAAGATATAAAAAGGGGTTTCTTTTTGTCTTTCTGTAAGGTGGACTT11.1627906976744187No Hit
CTTTTAACAGCATCTAACTACTCTCTATCAATAATCTCATCACAGCCGAG11.1627906976744187No Hit
CGCCCGACGTGCTCGACGCATGGCGCAGCGCGGGGGGACGCGGCGCGGCG11.1627906976744187No Hit
CGGTTCGGCGAGCAGGCGGCCCCACCAGGCGGAACCGGGCTCCAGCATGG11.1627906976744187No Hit
GCTTTGGGGAGCATGATAGTAGCTGAAATTGCCCTCATGCAGAATAGTAA11.1627906976744187No Hit
CCTCGTTGGTTCTGCAGCTTCATCAGTTTCTCAGCATGTTCCCTCTCCTC11.1627906976744187No Hit
CTGGCGCCCAGCGCGGTGTGGAAGGCGACCGCGGCGACGTCCTCCGGCCG11.1627906976744187No Hit
GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTG11.1627906976744187No Hit
GTCGTGGACGACCATCCGGACGCGCGCCTCGGCATCGTGGCGGTCGAGGA11.1627906976744187No Hit
GCATGGAGATGCGCGCATCTCCGTTCTCGGCTTCGACGATCTCGAAGGGC11.1627906976744187No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.1627906976744187Clontech Universal Primer Mix Long (96% over 26bp)
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT11.1627906976744187No Hit
ACCTCTTTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGG11.1627906976744187No Hit
GTCCAAGGGCATGGCGCAGAAGGTCCAGCTGGTGGCCGCCGTCGCCCACC11.1627906976744187No Hit
GTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGC11.1627906976744187No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA11.1627906976744187Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGCAAGAAGGCATATTTAACGGCAAAGATAAGAGGTACAAACGTAAAAT11.1627906976744187No Hit
GCGGGAATGGTCGGCAACGGTTCGGTCACGCACTTTCCGGGTGTCGTCGG11.1627906976744187No Hit
AAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACATG11.1627906976744187No Hit
CGCCGGGGAACGACGGTCGAGGTGGAGGCCGACGCGATCGGGCACGACTT11.1627906976744187No Hit
GGGCTCTGCGGCCTCGTCGGCGTCGGCGGGCTGGTGACGCTGGATGAGAC11.1627906976744187No Hit
CACCGGAGCCGACTGCCGCATGTGCCGGCGCGAGAAGATGAAGCTGTTCC11.1627906976744187No Hit
ATTCAGGATAATTGAGTTGTCGTCAGCACTGATATCGGCATTTTTTAACG11.1627906976744187No Hit
GGTTTTTTCCTAGTGTCCAAAGAGCTGTTCCTCTTTGGACTAACAGTTAA11.1627906976744187No Hit
TCTTTACTTGGTCCAGAAATAAAAGCGGCTGCCATGTGTGGCAGGCTGCA11.1627906976744187No Hit
GTCTTGCAGTGCAGCACGATCGGCTTGTCGTTCGGCAGCTGCGCGAGCGC11.1627906976744187No Hit
CTCCAACACCGCCTCCTCGATTCTGAGTCCGGCGACCATCGGCTACGCCC11.1627906976744187No Hit

[FAIL]Adapter Content

Adapter graph