FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003621857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTCGAGCGCATCGGCCGCACCTCGATCACGGTGCACGTCGAGGTCCA33.225806451612903No Hit
GGGCTGGCGGGACTGAAGGAAGCAAAAAGAGAAGGCACATAAGCCTTAAG33.225806451612903No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG33.225806451612903Clontech Universal Primer Mix Long (96% over 26bp)
GTCGTCGCCCGGGCCGCGCCCCGGAACCTGATAGCCACCCATTGCCTGTC33.225806451612903No Hit
GTCAAATTCCATCAAAGAAATAATATTTTGACAAAAAATGCAAGTCACCT22.1505376344086025No Hit
AAAGGAAAAAGGGCGTCGTTGATCATCTGGCTGCTTCCTGCTGGATAGGG22.1505376344086025No Hit
CTGGGATACCGCACTCGCGTCGCAGTTCGCCGGCCCACCGGTGTGGGTAC22.1505376344086025No Hit
CTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT22.1505376344086025No Hit
CCCTATCTGTGATCTACGTCCATGACATGACCTCTGTCACATACTCCTGA22.1505376344086025No Hit
GTACATGGGAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAG22.1505376344086025No Hit
TTTTTATCCCTTATTTTTTTTCTTTGAATGCTTTCAAAGTATCAAACTTG22.1505376344086025No Hit
GACTCACTCTATCGCCCAGGCTGGAGTGCAGTGGTGCAATCTCTGCTCAC22.1505376344086025No Hit
GGGCAATGGGAATTCTTATGTTCTTTAAAGGCCAGTCAAGGAGAAATTCA22.1505376344086025No Hit
ACCTGGGCCTGCGCCACGACAGCGCGCAGACCGATACCGAAGGCCGGCCC22.1505376344086025No Hit
GTATTATTTCAAGACTTATTGAGATGTTGGTCAAGTCTTATGCTGTAATA22.1505376344086025No Hit
GGTCCTGAGAAAGCCCTCTCTTGTGGAAGAATAACTGCCAAGCAGGAAAG22.1505376344086025No Hit
GGCCGTGGTTGGTACTCATGGTCCAAGCTGTTGTTGACCCGATAGCAACA22.1505376344086025No Hit
CTATATCTCCCAGGCCCTCAGTGTCGAGCAGAACTAGGGTGTGTTCTGGC11.0752688172043012No Hit
CGAGAAAAGGTGTCTGATAGAAGGACTTTCTCCATTATAACAGGAGGAAA11.0752688172043012No Hit
CCACTGCTTACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GGATGTCGTAGCTCCAGCCGCCATCGTCGTTGAAGGCGATGTCGATCGTA11.0752688172043012No Hit
CTCCGACCCCGCCAATCCCTACCTTTTCGACCTCGCCGGAACCACGCCGG11.0752688172043012No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.0752688172043012No Hit
ACCCTTGATTTGACCAACATTAGGAATAAATAGTCCAATGTTATGAAATA11.0752688172043012No Hit
GGGCGGCGCCTTCATCCTCACGATCCTCGTGTACGCGCTGGGTTCGTTCG11.0752688172043012No Hit
GCATTATTACTGAAACCACTTAATTCCCAGCTTTTTGAGTTTTTTAAAAA11.0752688172043012No Hit
ACGCAGGTGTGGGCCGGCTGCGGCTGCCGCTCGGGGATTGGATCCCATCC11.0752688172043012No Hit
GCGCAAGTGATGGCGCACGGCCAACGCTGGGGCGCGCTCTGCGCCCAACC11.0752688172043012No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA11.0752688172043012No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GGCCAAGGCGGCGCGGGCGCAATATGATCTCGCGCTCGCGGGCGCGCGGC11.0752688172043012No Hit
ATCAGCGGTAGCACCAGCACTAGCAGCATGTTGAGCCGGGCAGTGTGCGG11.0752688172043012No Hit
GGATGACTACGTGAGGTCTATATCTCGACTGGCACAGCCCACCTCTGTGC11.0752688172043012No Hit
GGAAGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAAA11.0752688172043012No Hit
GGTCAAGGGCCATTGAGTTCTGCCCATAGGCGGCCAGTGTTTCTTCCCGC11.0752688172043012No Hit
GTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGG11.0752688172043012No Hit
AATCTGTCTCAGAATCCTGTGCTGCTACAAGAAAAGGGTTTGATGTTTTG11.0752688172043012No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GTCTTCACCAACGCCGCCAAGACCCGCACGCGCGGCGTCGAGATCACCGG11.0752688172043012No Hit
ACCCAGGAGGCGGAGTTAGCAGTGGGCCGAGATCGCGCCATTGCACTCCA11.0752688172043012No Hit
GTTTATCAGATGAAAAATAATGGAACCTTGGACGCTGAGGGATTTAGTTA11.0752688172043012No Hit
TCCACCAAGCAAACAGACAAACCTCAGTCAGTGGAATGAGAAGCAGGAAT11.0752688172043012No Hit
AAATTTTTGCAATCTATCCATCTGACAAAGGGCTAAGATCCAGAATCTAC11.0752688172043012No Hit
AATCTGTCTCAGAATCCTGTGCTGCTACAAGAAAAGGGTTTGAGGTTTTG11.0752688172043012No Hit
GTCTGATCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTA11.0752688172043012No Hit
GCCGAGAGCAGCCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCTACAT11.0752688172043012No Hit
CACAATGTCCCCTGTAGGCAAAGCCTAGGCCAGAGTTACATCACCTTTGT11.0752688172043012No Hit
GTGTGGTGGTTCCAATTAGTGTCATGTATTGTTTAATGCTGAGAAAAGGA11.0752688172043012No Hit
GCTATATACAGGTACAAAATGTACTATTGGAGCTTGAATTTCTGCCCCTT11.0752688172043012No Hit
ATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0752688172043012Clontech Universal Primer Mix Long (95% over 21bp)
ATGTTCATGTGAGAGGGGTAGGAGAAAATAGCCATTCCTGCCTTGGTCTG11.0752688172043012No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
ATTACTACTAGACCTAAGAAATGAGGTAGACAGCAACACAATAATAGTGG11.0752688172043012No Hit
GTCCCGCAGCTTCACAAACACACCAACAATCCCAGTGCCACATTTGTCAC11.0752688172043012No Hit
CTTGTGGCGTGTTCCCTCAATGTGTTTGATTTTTGGAGTCCAAATGGTTA11.0752688172043012No Hit
GTATTACGTGCCTATTTTTATTTGAATGAATGCCAGGAAAGAAAATGGGA11.0752688172043012No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG11.0752688172043012No Hit
TCCTCAAATTTCGCACTGACCATAATGTGATCCCTTCCGGCGGTCGGTAT11.0752688172043012No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG11.0752688172043012No Hit
CTCTTTGCATCTTACAAAGTTAAACAGCTAAAAGAAGTAAAATAAGAAGG11.0752688172043012No Hit
GGGCAACAGTATTGGATCATTCCTTAGACACTAATCAGCTGGGGAAAGAG11.0752688172043012No Hit
GTGCAGATTCAGACCGTGCTCTCCATTCCACTGTGAGAGGGTTCGTCACA11.0752688172043012No Hit
GGTTTGGGGATCTCCAGGAAGCCCGACCAAGCTGTCCCCTTCCCCTGTGC11.0752688172043012No Hit
CCCCGGGGTCAGGGCCGCTGGTATTTGCTGTAAAGAGGGGCGTTGAGTCC11.0752688172043012No Hit
GAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATC11.0752688172043012No Hit
GTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTG11.0752688172043012No Hit
GGAAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGT11.0752688172043012Clontech Universal Primer Mix Long (95% over 22bp)
TTTTGTAGAATCTACAAGAGGATATTTTGAGAGCATTGAAACTGTCTCTT11.0752688172043012No Hit
GATCTCCCAGGCGTCCTTGGCCAGGCCCAGCGTCTGCGGCTTCATGATGG11.0752688172043012No Hit
CCTTTGTTAGCCACCTCCCCACCCACATACATTTCTGCCAGTGTTCACAA11.0752688172043012No Hit
ACCAAGACAAGTAAGCTGGTATCCTGTACCTGGTGTAGGCTCAAACTTAG11.0752688172043012No Hit

[WARN]Adapter Content

Adapter graph