FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003621920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003621920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length140
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTCGAGCGCTACATGGCCCAGCTCAAATGCTACTACTTTGATTACAAG39.090909090909092No Hit
TTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGTA39.090909090909092No Hit
GTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCT26.0606060606060606No Hit
ATCTGCGACGCTGCAGATCCAGTGGTCGCACTGTGTTCCGACGTGGGGCT26.0606060606060606No Hit
GCGGTGTACGGCACGCCGATTACCTGCGCGCCCTGCGCGGCGAAGCGCGC26.0606060606060606No Hit
GCCCGTTACTGAAACATGATGTTTATAACGAACAACATGCGGCGGTTTCG13.0303030303030303No Hit
GTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATTAG13.0303030303030303No Hit
GCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCA13.0303030303030303No Hit
GGTGATGGACTTAGCATTCACAGACGACACCACACACCACTGTCACGAGG13.0303030303030303No Hit
CCACCCGCACGCGCCGCCTGCTGCGTGCCCTGGCCGCCTCGCTGCTGCTC13.0303030303030303No Hit
ATGGTGTTTTGTAGTATTCGTTTTTATTTTTGAGGCACAGTCTCACTCTG13.0303030303030303No Hit
CATCTGGTACTGTCGGACCCTTTGTGGTAGCAGGTGGTGGAGCACATCTT13.0303030303030303No Hit
GAACAGCTTTCCAAACCCTGAGAGTCTGGTGGAGGTGCTGGAAACACCAT13.0303030303030303No Hit
GGCTGAGTCACACCTGCTGCAGTGGCTGCTGCTGCTGCTGCCCACACTCT13.0303030303030303No Hit
CTCCATAGGAACAGTGCTGTATGGCCCGACCCTGAGGTCTTTGACTCTCT13.0303030303030303No Hit
CTGCGGGGGTGCTGTGCAGCTGGCGGGGCCGGCGGCGGAGGCTGACCCCC13.0303030303030303No Hit
CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAAAGTTACCAC13.0303030303030303No Hit
CGGCACGGTGGTGGGCCAGGTCGACTACCTGACCGACGCGCTGAACAACG13.0303030303030303No Hit
TCCCAAGGGTGCGCTAGCTGTGGCAGTGGCCCAGGTGTGCCGCGTGGTAC13.0303030303030303No Hit
GTCCACACATGGATGCTTTCAAGTCCTTGAGGCCCACAGCCTGGTGTGTT13.0303030303030303No Hit
CATCTGTTATGCATCTTGTTTCTTTGAGTGGTAGTCCAATGTGACCCACT13.0303030303030303No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC13.0303030303030303No Hit
GTCCTATACTCTCACAAGCCACCACATTTCTGGTACTATAAAGGTGCTTT13.0303030303030303No Hit
GTCGTGGCAGTGGGTATCGCGATCATTGCATTCAAGGGCGGTATCGAGAT13.0303030303030303No Hit
TTTCAACACCCCATGCCATCTGACAGATGGGAACCTAGGGGACCCCTTCG13.0303030303030303No Hit
ATCAGGCCGTTTGGCGTGTCGGCCGCGAAGCCGATGTGCCAGTAGTTCTT13.0303030303030303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)