FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003622034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003622034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7783161
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG210698527.07107048151773TruSeq Adapter, Index 18 (97% over 40bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATGC2711123.4833148125806472TruSeq Adapter, Index 18 (97% over 39bp)
NATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG199710.2565924050652428TruSeq Adapter, Index 18 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)