FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003623550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003623550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences241481141
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA1952650.032.7266439
GGTATCA2107600.030.3318588
GTGGTAT2234650.028.7491976
AGTGGTA2317550.027.815685
CAACGCA1457050.026.82444412-13
TGGTATC2451950.026.203757
ATCAACG1568250.025.01914210-11
AAGCAGT2849100.023.2086141
TCAACGC1465700.021.80847212-13
ACGCAGA1898850.020.77081914-15
AGCAGTG3390400.019.5961422
AGAGTAC2062550.018.83674418-19
CAGTGGT3572350.018.4171284
AACGCAG1894250.017.02497914-15
CGCAGAG1965900.016.37169516-17
GCAGTGG4374950.015.1916063
GCAGAGT2786450.014.36388816-17
CAGAGTA2471200.013.02688518-19
TATCAAC2547800.013.01275610-11
TACATGG2104000.011.60463922-23
Produced by FastQC (version 0.11.5)