FastQCFastQC Report
Wed 11 May 2022
EGAF00003624253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3221384
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTACATGGCGTCGGTGCAGCTGAACGGCGCGCACCTGTGCGGCGGCG51150.15878268470942924No Hit
GTACATGGGAGTGTCTCAGCCACAGCGGCTTCACCATGCACAGCTGGGAG47550.14760736379146355No Hit
GTCCAGCACTGGCAAGAGCACGTGCTGCAGGCTGTCCGGGCGGCGGCCCG44670.13866710705709098No Hit
GGTGTAGATCCCGGGCTTCTTGCGGTTGCCGCAAACGCGCGAGCCCGAGG35900.11144278359860234No Hit
TCCTAGGAGCGGCCGCCTGCGCGGCGCCGCCCCGTGGTCGGATCCTGGGC32230.10005016477389841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)