FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003624261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTGCTTTTCCCACAGACAAAAGGCTCATTGGGAGAATTGCTAGAA35.357142857142857No Hit
GAATTACATTAGCACTTCATGAATTGCAGTTTTTTTTTTAAGTTTATGCC23.571428571428571No Hit
GCAACCCAGAGACTCCAAGGTGGTGAGGAATACAAGGTATCAGCTGTGCT23.571428571428571No Hit
TTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGCTCTCAATCT23.571428571428571No Hit
GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACG23.571428571428571No Hit
CTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAG23.571428571428571No Hit
CTCTAATTCTCATTTTCCCTAGCTGTTAAAATTAAGGGGATAAAACACCT23.571428571428571No Hit
GTGCACTACTGGCCGCGCATCGCCGAGCGCTTCGGCCTGCCGCTGGAGGT11.7857142857142856No Hit
GGGCTGGCTGCGCGGCAGGGGCCGTGGCTGGGTCACGGCCGAGTATGGCA11.7857142857142856No Hit
GCATAAGGGCTTGGGAGACGGGACAAATCTTATTTAGACCTTGAGTACTA11.7857142857142856No Hit
CCCAGGCACACCAGCGGCACCGCCAGGGTCAACCCGGCGACATCGAACAG11.7857142857142856No Hit
TGCCACTCCCGGCTAAAAATCTTGGTACTCCCTCATTCACGCTCACATTA11.7857142857142856No Hit
CTACTCTCTCCTCAAATGTTTGGACCACCCTTTTCAACATGGAAGCACCA11.7857142857142856No Hit
GGTCCATTCGATGATTCTCTTCGATTGCATTCGATAATTCCGTTTTTTTC11.7857142857142856No Hit
AAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA11.7857142857142856No Hit
TCCTTTCACTTTCCTATCTAGGGACGTTCATTAGGTAGACCTCTATAACT11.7857142857142856No Hit
TCCGACTTGACGTCCGAAATGTCGAGCCGAGTCTCGTCATACCGAACCGT11.7857142857142856No Hit
GGAAAGAACTTCCCCTTCCCTGTCTCCCATCCCTCTGTGGCAGGCGCCTC11.7857142857142856No Hit
GTTTATACATAGTCATTGGGCTTAAAGTTGCAGTTTCCAAGAAGCTATTG11.7857142857142856No Hit
GCCTTAGATACAAGAAACCTGAGTGCCAGAGTGACTGGCAGTGTCCAGGG11.7857142857142856No Hit
AATGTACAGTATTCAATTGTAATGCATGCCTTCGGTTGTAAGTAGCCAGA11.7857142857142856No Hit
CTTCAAAAATGTTAAACCTGGCTGGGCGCGGTGGCTCACGCCTGTAATCC11.7857142857142856No Hit
ACGAGGCGGTCCTCACGATGCTGGGTCAGATCCGCGAGTCCGGTCAGAGC11.7857142857142856No Hit
GTGAGGATGTTTTCATAAGAGATTAGAATCTCAATCAATAGATCAAGTAA11.7857142857142856No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTGAGACAGAGTATTA11.7857142857142856No Hit
GGTATGAATAGACAGAACCCTATCCAGTGGAAGGAGAATTTAATAAAGAT11.7857142857142856No Hit
AAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTAGT11.7857142857142856No Hit
GTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGTCAAAT11.7857142857142856No Hit
GGGATGCCCTGGCCCATATCCCCCAGCAGCAGGTCTCCCTCTATCTCTCG11.7857142857142856No Hit
CATTGGAGACTCAGGTTCGAGGCCTGCCCTGACCCTCGGGCCTCGGGAAG11.7857142857142856No Hit
GAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCC11.7857142857142856No Hit
GCAGACCCCTCTCTGCACGCCAGCCCGCCCGCACCCACCATGGCCACAGT11.7857142857142856No Hit
AACGTGGGGATTGCAAAGCAAATAAGGCCGCGAATCATGCCGATGCGAAG11.7857142857142856No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT11.7857142857142856No Hit
TTTCCAGGGACTCCACGCTCACCAGGGACACCTCGCTCTCCCTTAGGGCC11.7857142857142856No Hit
ATGATGGGTCCATCCATTTCAATTTCATGGTAATTCCATTCGTTTCAATT11.7857142857142856No Hit
TCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATT11.7857142857142856No Hit
ATAATATACCATAAGCTCCTACTTCCCTGCCCCTCCCTAATCAGTATTCT11.7857142857142856No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA11.7857142857142856No Hit
AAACAAAAAACCAGGCCGGGCGCTGTGGGAGGCTGAGGTGGACAGATTAC11.7857142857142856No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT11.7857142857142856No Hit
CATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTG11.7857142857142856No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACCCGG11.7857142857142856No Hit
ATCCGATGCCGAGGAGCGCGATGCCGGCGCCCTGGATCACCAGCGCCGTG11.7857142857142856No Hit
AAATTCCTTAAATAGTAACACATAAATCTTAGTACACTGGCAGTTCTACA11.7857142857142856No Hit
GTCTGGCGTTTTTCGCCAAGCAGCAAGCTGATCAGTTGTCCCAGGCGGGG11.7857142857142856No Hit
GCTAATTCCTCCCCCAGGGCTTCTCGCACAGCCGCTGGCTCCGGAAGGTG11.7857142857142856No Hit
GGGCTCTGAGCCCCCCACTCCACTGGCGCCCCGCAGGTGGGGCATTCGAC11.7857142857142856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)