FastQCFastQC Report
Sat 25 May 2024
EGAF00003624339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115743480
Total Bases11.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3140520.27133450627197314No Hit
CTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC2010720.17372209648439807No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC1421960.12285443637948333No Hit
GCTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTG1242520.10735118729797999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)