FastQCFastQC Report
Tue 4 Apr 2023
EGAF00003624366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63572522
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG1334480.20991459171621352No Hit
CTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCATT699770.11007428649755313No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT637300.1002477139415674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)