FastQCFastQC Report
Sat 13 May 2023
EGAF00003624369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38252445
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC1329640.34759608176679946No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAG798360.20870822767015285No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC706520.18469930484182123No Hit
GTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGG671060.1754293091591923No Hit
GGCTCTTCTGCGTGTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCAT583180.15245561427511364No Hit
CTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTC500280.13078379695729253No Hit
GTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCA485830.12700626064556136No Hit
GGCACGGTCACCACGCTGCTGAGGGAGTAGAGTCCTGAGGACTGTAGGAC485300.1268677074105982No Hit
GCTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTG425420.1112138060717426No Hit
GTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCAGATGTAGGTCT421270.11012890809986133No Hit
GGAAGAAGGAGCCGTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTG411150.10748332557565929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)