FastQCFastQC Report
Sat 4 Mar 2023
EGAF00003624381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85420638
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA6215590.7276449983902017No Hit
CTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC1335590.15635448660545007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)