FastQCFastQC Report
Thu 16 Mar 2023
EGAF00003624383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80355764
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3426860.4264610065806853No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC1123820.13985555535256936No Hit
CTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC1057440.1315947913829803No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC914100.11375661862912535No Hit
GTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGG866260.1078030942497168No Hit
GGCACGGTCACCACGCTGCTGAGGGAGTAGAGTCCTGAGGACTGTAGGAC804570.10012598473956391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)