FastQCFastQC Report
Thu 16 Mar 2023
EGAF00003624384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80355764
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2546210.3168671260471122No Hit
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGA1260070.15681140185537903No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG888500.11057078618529469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)