FastQCFastQC Report
Tue 7 May 2024
EGAF00003624394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18546118
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG686670.3702499897822283No Hit
CTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTT353480.1905951423365256No Hit
GTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA336240.1812993964559052No Hit
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG319720.17239187198097197No Hit
CGAACGCCGGGTTAAGGCGCCCGATGCCGACGCTCATCAGACCCCAGAAA260240.14032047030003797No Hit
GTTGGCTTTTCTCTTGACGTGGGAGAAATTGAAAAGAAGGGGAAGGGGAA257750.13897787127203656No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT244230.1316879359874665No Hit
GGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAG233530.1259185345418378No Hit
CAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAG222930.1202030527358879No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA217100.11705953774261546No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA215880.11640171813853444No Hit
AGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTG205320.11070780418845604No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA200920.10833534004259003No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA193450.10430754295858571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)