FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003624477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCG32.272727272727273No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT32.272727272727273No Hit
GTCTATCCTCGCTGATGCTCAGTGATACACGCTGATGCACGTAGTGAGCA32.272727272727273No Hit
GGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGA32.272727272727273No Hit
AGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGA32.272727272727273No Hit
GGCTTCAAGTGTTCCTACTGTCATGACCTGCCAACATGCTGGGGTTATAG32.272727272727273No Hit
AGGTTAATCACTGCTGTTTCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTT32.272727272727273No Hit
GCTCATCATCTGCCTTGCTTTTTCTTTTTTAATTATTATTTTGAGACAGG21.5151515151515151No Hit
CAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCC21.5151515151515151No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT21.5151515151515151No Hit
GAAGTCTAACTACCTGGTTACACATTTTTCTTGGCACAGTCAACAGCCAG21.5151515151515151No Hit
GCCACGCCAAGGGCGAGTTCAAGGGACTGGTGAACTTCATTGATGACGGC21.5151515151515151No Hit
GAGTACTTTTTTTTTTTTTTTCCTTCCCTGCAATATTTATTAAGGAATTT21.5151515151515151No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC21.5151515151515151No Hit
TATTATTGGAGTCCCAAGAGAGGAGAAAGAGTGGCACTGAGGGAATAGTT21.5151515151515151No Hit
GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG21.5151515151515151No Hit
GCCCTGGACTTTCCCACGCTAACCGCCGCTCAGTACACAGGGGGCGGCTG21.5151515151515151No Hit
GTCTTACAGCTTGGATGTTTGGATGTGGATGTTTGGCTGAATTTATATAT21.5151515151515151No Hit
CCCATGTCCCTGCCATCAGAGTGTCTGTGAAGGACACCACAGGATGCGGG21.5151515151515151No Hit
GGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGC21.5151515151515151No Hit
GTGCTGTAGTTTCCCCTCATCAGGCAGGAAGAAGATGGCGGTGGCATTGC21.5151515151515151No Hit
ATGTAGCAGCAGGTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTG21.5151515151515151No Hit
TAGTTTGGGAGAAAAAGTAGTATGGTGAGTAAGGTTATGCGTATAATTTC21.5151515151515151No Hit
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAA21.5151515151515151No Hit
ACATGGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCA21.5151515151515151No Hit
GTCACCATTCGACCATGACCAGCAGCGAAGCGCCGCCGACCGGCGCGGGC21.5151515151515151No Hit
GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT21.5151515151515151No Hit
GCCCCTGCAGCGAGAACGTATGCCGGTGGCGCTGACTGTGGTTTTCCACC21.5151515151515151No Hit
CCTCTTCATGCGACATCTGCAGCTTGGCCTTCCAGCCGCTGGCAAAGCGG10.7575757575757576No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
CCTCCTAGCCCACAGGCGGTTTTGTGAGCTGCTTCCCCAGGAGCAGCGGA10.7575757575757576No Hit
CGCGGCAAAAGTGGAGTCAGAGCAACATGGAGATCGCTTACCGAGAGTAG10.7575757575757576No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT10.7575757575757576No Hit
GTGTGGAATCAAGCATGTGTAAGGCACTGCCCCCGCCAGACCCTTCTAAC10.7575757575757576No Hit
GGAATGTTCTTCCATTTCTTTGTATCCTCTTTTATTTCATTGAGCAGTGG10.7575757575757576No Hit
GCGCACCAAAGTGGTACATGTCCGTGTCGTCACCGGTACCGTGCATCACC10.7575757575757576No Hit
GTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGT10.7575757575757576No Hit
GTTCCCTGTAGCCACCCCCACCCCACTTGCCCTTGGTTCTTTAGAAGGAG10.7575757575757576No Hit
CTCCATACACAGGCAAAAATAAGTGTGTTACTTAACATACTGGAAATTGC10.7575757575757576No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAGAAAGGGTTTCAC10.7575757575757576No Hit
CTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCG10.7575757575757576No Hit
GCAGTTCGGTCAATCCGCCGAGGGGCCAGCCACCACCGGGCAACTCGGCA10.7575757575757576No Hit
ACCTTGACCTAACGTCTTTACGTGGGTCCTTGAGGGGAGTTTGTTTGAGT10.7575757575757576No Hit
GATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGA10.7575757575757576No Hit
CAGCACTTTGGGAGGCCAAGGCGGGTGTATCACTTGAACCCAGGAGTTCG10.7575757575757576No Hit
TGGCACTAAGATAGTCACATGAAAGGATTTGGAATTAAATAGTTTTAAGA10.7575757575757576No Hit
TTTCGGGTCAGTCTTGGCATAGCCGCGGTGGTGACGGCGCTGTCGCTGGC10.7575757575757576No Hit
TTCATGCCCTGGGTTCTGCCCGCACGGACCCCCATCTCTGTGACTTCCTG10.7575757575757576No Hit
GATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATG10.7575757575757576No Hit
CCACGTGCGTGACCCTCAGTGCGCCTAAGACCGCGTTGCCTGGCCCAACG10.7575757575757576No Hit
TTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCAC10.7575757575757576No Hit
TTGAAGTGGAACGTATAAAGGCTGAATCTGCAGAAGCTGCAAAGAAAATG10.7575757575757576No Hit
GAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTAATTAAGGA10.7575757575757576No Hit
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACC10.7575757575757576No Hit
GTCTTACAGCTTGGATGTTTGGATGTGGATGTTTGGATGAATTTATATAT10.7575757575757576No Hit
GAACTATCCTTAGGTGCAGGACAGTCTGAAACACTTTATGCAACCTCATC10.7575757575757576No Hit
GTCCTCGGTACCATCCTGGGAGCAGGCATTAGCCCCCTTTTGCAGATGAG10.7575757575757576No Hit
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA10.7575757575757576No Hit
ACTTGGGAGGCTGAGGCAGGAGGGTTGCTTGAGCCCAGAGTTGAGGCTGC10.7575757575757576No Hit
AAGTGAGACGGGCTCTGGGACCATGGTGACCAGGCTCTTCCCCTGCTCCC10.7575757575757576No Hit
GAATAAATGAGTGGGAGGAAGAGGTTGGAAAGGAAATGCGAGGTATGCTA10.7575757575757576No Hit
TTCCATTAGAAAAAAAGTCTAATTTCCTAACAATACAACCAAATACTATA10.7575757575757576No Hit
GGACGGGGAGCACCGGCAGCGGGTCGCTGAGCGCGATGGGCCATACCTCG10.7575757575757576No Hit
GCATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAGTAAACTAGTAGC10.7575757575757576No Hit
GACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCCCAAGATC10.7575757575757576No Hit
CTTTACAGCTCCTTCCCCAACACGCTTCAGCTGTCTCACTTCTGTTCTCA10.7575757575757576No Hit
TTACCCTCCAGGTTCCAAATCCCTCAGAATTAAGAGCCAAGCCACCTTCT10.7575757575757576No Hit
GCCAGACTGTGTTAAAACAAACAAACAAACAAACAAATCTGGCCCCAGGC10.7575757575757576No Hit
ATCTAGAAGCTCAGATTCTTGGAGGATAGATGCCTTAAAAGGAAAACTGT10.7575757575757576No Hit
GCCGAAAGATCCCTGATCAAGGTCTATGGACCGTGGAGCGCTCTTGAACA10.7575757575757576No Hit
CGCCTCTCGCGCGGCGGGATCATCGCCGAGGGCGTGGCTGGAGGCGAGCA10.7575757575757576No Hit
ATTCCGTGGGTGGTGGTGCATGGCCGTTTTTAGTTGGTGGGTCGATTTTT10.7575757575757576No Hit
CCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGTCGTGGTGATTGTGG10.7575757575757576No Hit
AAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGC10.7575757575757576No Hit
GCTCACGCGACCTCCCCCACCGTCGCGCCGAGGTCACCGGCGTCGAAGCA10.7575757575757576No Hit
CACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACA10.7575757575757576No Hit
GATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCA10.7575757575757576No Hit
TGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTA10.7575757575757576No Hit
GGTGCTGACTCCTCAGGGCACGACAGCAGAAGGATGTTGCTTTTTTAAGG10.7575757575757576No Hit
GTCTTAGGATATGTCGTGGGGTGGGCAAGGTAATCAGTGACAGTTGAAGA10.7575757575757576No Hit
CCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCA10.7575757575757576No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTTACA10.7575757575757576No Hit
CCCAGGAGTGGGCCATGGAGGGCCCCCGCGACGGGCTGAAGAAGGAGCGG10.7575757575757576No Hit
GTCATGACTAACCCCGTCACCCTTCGCCCCGCAGATCAGTGCTGTTACGA10.7575757575757576No Hit
CCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTG10.7575757575757576No Hit
CAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATC10.7575757575757576No Hit
ACCACGTTGTTCGCCAACGTGAGCTGCGACTGCAGGCACGTGTAGATGGC10.7575757575757576No Hit
CCGCCATCCTGGGCCCCACGTGTTGCCTGACCATTCCTGAGCCCAGGTGG10.7575757575757576No Hit
CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT10.7575757575757576No Hit
GGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACAT10.7575757575757576No Hit
TGTTATTGGTAGTTCTGAACGTTAGATATTTTTTTTCCATGGGGTCAAAA10.7575757575757576No Hit
GGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACCAAGCTGCAGAAC10.7575757575757576No Hit
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG10.7575757575757576No Hit
CTGTTAGTTTTTATTGTTTTAGATTTATTATGCTTCTTCTGGAAGTATTA10.7575757575757576No Hit
GTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTTCCGCATTCAT10.7575757575757576No Hit
CTTGGCGCCAGAAGCGAGAGCCCCTCGGGGACAGTGCCAGGTGGGGAGTT10.7575757575757576No Hit
CGGTCAGATGTGTATAAGAGACAGACTTAGAGGGCTTCGATCCTTTCAAT10.7575757575757576No Hit

[WARN]Adapter Content

Adapter graph