FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003624589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTGTTGCTTGGGTTCGATGCCGTTGTGGGCGAGCGCGAGCGCGGCTC33.488372093023256No Hit
GCTGGGCGGCCATTGCCGCGAATATCGGTCCGCGGGTTTCCCAATCCATG33.488372093023256No Hit
GCCGTGGAAGGTGCCCGCCCAGGGCAGCGTGGTCTTGTACGACGTGCCGG33.488372093023256No Hit
GGACGAGCCCACCAACGGCCTCGATGTGCTGGCCACCCGCGCGCTGCGCG33.488372093023256No Hit
CTTTAGCGTCTTGACGCGCAACTTCACCTGCGTGGCGGGCGTCCCCCATT33.488372093023256No Hit
ACTTGGTTTGCCAGTTCCCTTGCTGGAGCCAAAACAAGTACCTTTGTTGA22.3255813953488373No Hit
CATGCTGCGCGCGGCCGGCGTGCGGCTGTATCGAGAGCCCAACGCGCAGG22.3255813953488373No Hit
ACCTGTGGGTGCGCTTTTTTGAAACCATGGGCCGTGTCTGTTATGACGCG22.3255813953488373No Hit
AGGTTGCGCTATCAAAACGCAAAAATGTTAACGAACTGGGATTTTAGTTA22.3255813953488373No Hit
GTTCGCATGGCGATCTCCTTGCGGTTGATGGTGGCGTCATGCTGGGCGCT22.3255813953488373No Hit
GGCCTCACCGAAGCGGTACTGGGCCAGCAGCGTGGCCGGCAGCGACTTGA22.3255813953488373No Hit
GTCTTGGCATAATCGCGGAAGTCGTCGACCATGCGCTTCATCGCCGTCAC22.3255813953488373No Hit
GTCTCGGCGCGTCTGCGTCTGGCTGGCTGGCATAAATATCTCACTCGCAA22.3255813953488373No Hit
GGCGCCAACACCTGCAAGGAGCTGGCCGGGTCGGCCTCCACAACGGCGGG22.3255813953488373No Hit
CGACTACCCCGGCGCGCTGGAGCTGGCCTACAAGTTCCGCGAGGACGCGG22.3255813953488373No Hit
CGCTGTCCTCGTGCATCAGCAGCTCGTCTTGGGCGCGCGCCTCGACGGTC22.3255813953488373No Hit
TCATCAGGATGCGCCGAGCGGCGACATCGTCTTCGTCGCAATCGATGATC22.3255813953488373No Hit
GCCTGATCATGAACTACCTGGCGCGTAATGCGCTGGCGGTGGCGGCGCCT22.3255813953488373No Hit
TAGTAGCCTCCCGGTCCTAAAATGATAAAAGCAATGAGTCCTCCATGAAG22.3255813953488373No Hit
CCGGCACCCACCCCGGCGACGAGCGAGTAGAAGACGGAGTTTCGCAGCCA11.1627906976744187No Hit
GCGCTGGACCGCAACACCCTCGCCGACGCCCCGGCCTCGCTCACGGGTGC11.1627906976744187No Hit
GTGGTTTTCCACCGCGTGCCCGCGCGCGACGATGGCCTCGACGCAGCTCG11.1627906976744187No Hit
GCATAGCGCTGGTCGTGGTCGAGATAGTCGCCATCACGCCGTTGCTCGCT11.1627906976744187No Hit
CTCAGCTAACAGAGTTGAACCTTTCTTTTGAGAGAGCAGTTTTGCAACAC11.1627906976744187No Hit
GCGCTCGCGGTCCCGCACGCCAAAGAGCGCCACGGCGCCGTTCGCATCGC11.1627906976744187No Hit
AATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGC11.1627906976744187No Hit
CATCGGGAAACTCGGCGTAGCGGGAGGTCAGCATCGCCGGGATTTCGGTC11.1627906976744187No Hit
GAGTCTGCTTCCACCTCGCGAGCCATGGAAACAGGGCTGGCGAGGTTGTT11.1627906976744187No Hit
GCCAAATGACGTGCATTTGGTTTCTGCTGTATCACGCATTCGTCCGGTGG11.1627906976744187No Hit
TACCAGGGCCAGTTGTTGCTGGGGTTCGCGCTGATGCTGGGCGCGACCGG11.1627906976744187No Hit
GATAATCCCAGAAAGTCAGCGGAATATCTGCTTTGTTGCGCAACCAGGAA11.1627906976744187No Hit
CCACCGATCAGGGCCAGTAAATACACAACCTGATTCGCACACCGGCCTTC11.1627906976744187No Hit
TTCTGAAGGACTGCTTGCCAGGATTCCGGCACGGGTCGGCCAGTCAAAAA11.1627906976744187No Hit
ACACTGGGACGCTGAGGCAAGAGGATCACTTGAGCCCAGGAGTTCAAGAC11.1627906976744187No Hit
CTGACGACCTTGACCGAATCGCCGCGTTCGCTGCTGAAGCCCATGGCCTC11.1627906976744187No Hit
GTGTTGGTCAGCGAGATTTCCGAGGTCGAGATCAGGTACTGCTCGCCCTG11.1627906976744187No Hit
GGGCATGATGGCTGTCTGCGCCGTCGCGGCACTCGTTCTGGGTCTGCGCA11.1627906976744187No Hit
GTCTAATAGTTGGGTGAATAGATTCATGTGTCTGAAGCCATACAACACTA11.1627906976744187No Hit
GTCATCGGCGACCTGCTGCGGCGGCACGGCCATGTGCAGGGCCAGGACGC11.1627906976744187No Hit
TTGATGTCCCACGGTTGCTGCGTGCTGGTCTGGCCTTCGCCCAGCAGCCA11.1627906976744187No Hit
GCCTCGCAGCGTGCCGCTCGCGCACAAAACAAGGATGCACCCGCGGACGC11.1627906976744187No Hit
CCGACCGCCAACGAAACGCCGTACGAAGCGCTGGGCGCGTGAGCACGGGC11.1627906976744187No Hit
ACGGCATCGGCGAGCAGGACGACATGCTGGCCGTGCTCGACTGTATGCGT11.1627906976744187No Hit
ACTGGAGCCACTGCGGGAGCTTCGGACACACGGTCCGGGGCGCTTGAACC11.1627906976744187No Hit
GCCACCACGTTGGTCAGCGCCTTGGAGTTGAACGGCACGATGACGATCAC11.1627906976744187No Hit
CGTCCGGACAGCCATAAGGTCCATACGCGTTTCAATCAGGCGCTGACCCA11.1627906976744187No Hit
CTTCAGCGCAAAGCCCAGGACCGCGGCCGTCGCCGGATCGGCGGACTCGC11.1627906976744187No Hit
ACCGGCGCCTCGTCGGCCGATGCATCGTGCCCAAGCAGGCGCTTGCCGAT11.1627906976744187No Hit
CAGAAAACGCGTAGCCCTGAATCTGCGTCACCTCGTCTGACCCGATGGGT11.1627906976744187No Hit
TGCTGATTGCGCTGGAAAGTCGTCTGCATCAAAAGCATAAACTGGATGCT11.1627906976744187No Hit
GTGGTTTTCCACCGCGTGCCCGCGCGCGACGATGGCCTCGACGCAGCGCG11.1627906976744187No Hit
GTAATGACCTCAGCTGAAACGTCCTGGGTTGAAACCACTATCAGAGGCCA11.1627906976744187No Hit
GGCCGCCGCGCCGCCTGCGTGGGCGCCGTCGCGCTGATCTCCATGCTGGC11.1627906976744187No Hit
TCTTGGTACCGGGCGCGCTGGGCGCGCTGAGGTCGCCGCTGTCGACCTGC11.1627906976744187No Hit
CCCATGGCGGGCTGGAGCACCAGCCACACGACATGGTGCATGTGAACGTG11.1627906976744187No Hit
GAACATGATTTGCCTGGATTGTGCAAAGCCCAACAGGTGTTCTAGAAGGG11.1627906976744187No Hit
GATCTGGATCGTCGACGACATCCACGAGCGCAAGCTGGCCGATGCCGCGC11.1627906976744187No Hit
AGAGATATGGACCTCAATACAAGGCGCCACCAACTGGACGAGGGCATCGG11.1627906976744187No Hit
TGGGGGCGTTGCGCGCCAGGACAAGGTCTTGTCAAAGCAATCAGCTATTC11.1627906976744187No Hit
CTTCTGAGGCAGCACGGCTGCAAAAAACAAGGCATTCACCAGCCCAGAGG11.1627906976744187No Hit
CCACCGATCAGGGCCAGTATATACACAACCTGATTCGCACACCGGCCTTC11.1627906976744187No Hit
CTATCACCCGCGCCTACGGCACGGGCTTCGATCGCCGCCACCGACCGGGC11.1627906976744187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)