FastQCFastQC Report
Tue 10 May 2022
EGAF00003624631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63781
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1830.286919301986485No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1290.20225458992489928No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA890.13953998839779871No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT840.13170066320691115No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG810.12699706809237862No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT800.1254292030542011No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT760.11915774290149105No Hit
GTACATGGGCACTGCATCCTGCTGACGCGCGACACCGCCTCGGGCAACTG750.11758987786331353No Hit
GTGCAGCGCGGCGCGGTGCGCCGGCTGATGTTCGCGAAGGACTACCTCGG740.11602201282513601No Hit
GTACATGGGCGCGCCATGTCGCCGCGCGTGTGATGGCTCTTGAGGCCGAC680.10661482259607094No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA660.10347909251971589No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT650.1019112274815384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)