FastQCFastQC Report
Tue 10 May 2022
EGAF00003624632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63781
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1470.23047616061209453No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1470.23047616061209453No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA920.14424358351233127No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT870.13640425832144368No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT800.1254292030542011No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT780.12229347297784607No Hit
GTACGTGATCGGCGCCAACCCGAAGGCGGCGCAGCTCAACGGCATCTCGG760.11915774290149105No Hit
GTACATGGGCGCGCCATGTCGCCGCGCGTGTGATGGCTCTTGAGGCCGAC750.11758987786331353No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC710.11131841771060347No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA700.10975055267242596No Hit
TCTCCATGTAGAGCCGCTTGTCCCCGCGGCCGAAGTTGACGACGGCGGCC690.10818268763424845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)