FastQCFastQC Report
Tue 10 May 2022
EGAF00003624674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7991
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC240.3003378801151295No Hit
GTGCAGGCGGCGGGCTTCGGCGCGGAGATCGCGGCGAGTGCGGCGGAGGC110.13765486171943436No Hit
CAGTGAGAGATAGTTATCCATTCAGGACGTAAACTGTGAGGTGCACATTG110.13765486171943436No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA100.12514078338130397No Hit
GCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGC100.12514078338130397No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC90.11262670504317357No Hit
CCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAAGGACATGG80.10011262670504316No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG80.10011262670504316No Hit
GTATGATGCCGGGCGGGACGGCTTCATCGACCTGATGGAGCTAAAACTCA80.10011262670504316No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG80.10011262670504316No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.10011262670504316No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA80.10011262670504316No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA80.10011262670504316No Hit
CCTCTAATCTCAGCATTTTGGGAGGCCAAGGCTGGCAGATTGCTTGAGCC80.10011262670504316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)