FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003624733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTACT210.526315789473683No Hit
GTCATTATGTGACCACGTCATGGCCCTCACTGGGCTGTCGTGAGCCTGTA210.526315789473683No Hit
GGCTGTGACTGGTCCCAGTGATTATACGTTATTGGTTGCTGTGGGTCTGG15.263157894736842No Hit
CAAGTTGGCCGAATTAAACAAGCCGTCTTGACTCCACCCTGTATGGTTTG15.263157894736842No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT15.263157894736842No Hit
ATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC15.263157894736842No Hit
GGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCC15.263157894736842No Hit
CTTCAACACTGCCACATTTCCTTATTGATGCATCTTTTCCCACCCTGTCA15.263157894736842No Hit
GAAAGTCCCGTTTCCAGTCTGATTATAAAGATACATATGCCCAAAATGGC15.263157894736842No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC15.263157894736842No Hit
ACTCTGCTCTCTGTGATACTTGCTGATACTGCTGGAAAGGAATCATCAAG15.263157894736842No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA15.263157894736842No Hit
ACGCACCACCGGGGCGGCCTCGCGGGTGACTCCGGGCTCCGTGGCTGTCC15.263157894736842No Hit
GCATACGTGTGTGAATATAGGCCTTAGAGCACTTGATGTGGTAGTGCAGG15.263157894736842No Hit
GATATGAGCCAGTGCTGCTGCTCTCTACGGAGTGTGCTCGGCTATAACAG15.263157894736842No Hit
GATAAGGAAGGCATTCCTCCTGATCAGCAGAGGTTGATCTTTGCCGGAAA15.263157894736842No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)