FastQCFastQC Report
Tue 10 May 2022
EGAF00003624789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527852
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21890.4146995748808378No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13490.25556405962277307No Hit
CTTATACACATCTCCGAGCCCACGAGACTGAAGGCGAGGTATCTCGTATG9960.18868925380599108No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8960.1697445496086024No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG8720.16519782060122915No Hit
CTTATACACATCTCCGAGCCCACGAGACTGAAGGCGAGGTATCGCGTATG7080.13412850571751173No Hit
GGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGC7020.1329918234656684No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG6480.12276168319907853No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA6130.11613103672999249No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT5560.10533255533748097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)