FastQCFastQC Report
Tue 10 May 2022
EGAF00003624821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2815366
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAATCA43300.15379883112888343No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41450.14722774942938147No Hit
GTATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAAT37670.1338014311460748No Hit
CTCTAAGCCTGTCCACGAGCTCAATAGGGAAGCCTGTGATGACTACAGAC28950.10282854875707102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)