FastQCFastQC Report
Tue 10 May 2022
EGAF00003624868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences606618
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT10360.17078293093841596No Hit
CACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCAC7720.12726295625912848No Hit
GTACATGGGATGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAAT7680.1266035627033817No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC7350.12116356586847077No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA7210.11885568842335703No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6990.11522902386674974No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT6700.11044842058758561No Hit
TGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAGATGAATC6370.10500842375267468No Hit
ATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAA6310.1040193334190545No Hit
GTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGT6100.1005575172513839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)