FastQCFastQC Report
Tue 10 May 2022
EGAF00003624921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences920583
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG26910.2923147614066304No Hit
GGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG21090.22909395459181844No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC18700.20313214560772902No Hit
GTACATGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG18620.20226313108106495No Hit
GTACATGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC18090.19650590984191538No Hit
GAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCG15780.17141311538449003No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA14320.15555360027287057No Hit
GGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTT13310.14458229187373653No Hit
GTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCGG12730.13828193655542195No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA11810.128288269498785No Hit
GGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACA11770.12785376223545297No Hit
GTATAGTACGGATGCTACTTGTCCAATGATGGTAAAAGGGTAGCTTACTG11760.12774513541961996No Hit
GTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGAA11240.12209654099630343No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11210.12177066054880441No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC10970.11916361696881214No Hit
ATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATT10940.11883773652131312No Hit
GTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGG10890.11829460244214807No Hit
GTATTAGGATTAGGATTGTTGTGAAGTATAGTACGGATGCTACTTGTCCA10660.11579618567798884No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG10450.11351502254549563No Hit
CCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC10270.11155973986050145No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA10260.11145111304466844No Hit
GTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATT10130.11003896443883929No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT9720.10558526498968589No Hit
ACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT9690.10525938454218685No Hit
GCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAAT9450.10265234096219461No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTT9360.10167469961969752No Hit
CATCTACAAAATGCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGT9320.10124019235636549No Hit
TCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC9280.10080568509303345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)