FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003624937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATCATCGGGGGACATGAGGCCAAGCCCCACTCCCGCCCCTACATGGC315.0No Hit
CAACATGGGGATTAAAATGCAATAATTTTCACAGGATTGCCACTAGTCCA210.0No Hit
GTCCTAATCACAGCAGTCCTACTTCTCCTATATCTCCCAGTCCTAGCTGC15.0No Hit
ATTGTAGGGAACAGGCTTCACTGGGATCTTTTAGGGAATATCTTCAGCTT15.0No Hit
TAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAG15.0No Hit
GCTGGGAATCTAGCTTCTCCAGGACTGTGGTCGCCCCGTCCGCTGTGGCG15.0No Hit
AGGCTGCTCAGGGCTGGTCTTTTAGGACCCTTCCCTTGAGCCCACTATGG15.0No Hit
GAGAGTATATTGTTGAAGAGGATAGCTATTAGAAGGATTATGGATGCGGT15.0No Hit
CTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTTCTCCCACGTC15.0No Hit
GGTGGAGGTCCAGGAGAAGGTTTTGATGTGGCCAAGACAGGTGATGCTCG15.0No Hit
GTGTCTGGCGGATGCGGTCGTGAAGATAGGTACTGGTTTTGGATTAGGAA15.0No Hit
GTCCTGGAGAAGCTAGATTCCCAGCGGACGCGGGCGGCCGGGAGCCCCCG15.0No Hit
AGGAGCTGTTTAAGCTGGCCACCACGGCACTTTACTTCACATACTCAGCC15.0No Hit
GTCCTGGGACTCCGTCACCATGAAGCACAAGGGCTTTGCCTTCGTGGAGT15.0No Hit
GTGCAGTGGTGCAATCTCGGCTCACTGCCTCCACCTCCCAGGTTCAAGCA15.0No Hit
GCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAG15.0No Hit
GACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAA15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)