FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003624938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003624938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTGTAGTGTGTGTGAGTGTTTTCCCAGGGGGGCCGTCTGCCCCCAGC315.0No Hit
GGGCCGTAGAAATGTGACCAAAATCAATCTTATTGACTCATTCTAAAAGC210.0No Hit
CTACAGACAGGACAGGACAGGCCTCCATTAGTCTCAGGGGCAAAGCATTG15.0No Hit
CCTGTGATGACTCCAGGTGCCTGGGCAGCCATGACAGCCTGGGGCAAAGT15.0No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT15.0No Hit
GTCATAACCCTGGGAGTCTGGGTTCTTCTCATACAAGTTTTCGTCCTCGG15.0No Hit
GCCCTATGTAGTGGATCCGCTCCACGTACTTCTGGGCAGCCTTGGGGCAC15.0No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA15.0No Hit
TATATGGTGTGCTCACACGATAAACCCTAGGAAGCCAATTGATATCATAG15.0No Hit
ACCAGGTGCTGGAGTTTAAAGCATTACTGATAACATTGTTACAGAAGAAT15.0No Hit
TGCCTGACTTAGGCCAACCCTACAGCAGTGCTGTTTACTCATTGGAGGAA15.0No Hit
ACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGA15.0No Hit
CTGTCATGGCGGCTGGACTGTTTGGTTTGAGCGCTCGCCGTCTTTTGGCG15.0No Hit
GCCTCTGGCATCCCCGACTTCAGGTCTGTGATTGTGCAGGGGAAGTCGAG15.0No Hit
ATATAAACTCTGTTTCCTTCCACCACATCAATGAGGTCATCAGCTGTAGC15.0No Hit
ATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCTGCCTACCTT15.0No Hit
GCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)